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PLM4_5_b1_sep16_scaffold_710

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_710_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3..284
DNA (282bp) protein (94aa)
ABC transporter related protein Tax=Pelosinus fermentans RepID=I8RHV9_9FIRM bin=16ft_combo_ws3_JS1 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_2
unknown

Not on your lists

994..1176
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_710_3
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1206..1712
DNA (507bp) protein (169aa)
Peptidase A24A, prepilin type IV Tax=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) RepID=A1VCG8_DESVV
Putative membrane protein {ECO:0000313|EMBL:EZP35082.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_710_4
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1712..2155
DNA (444bp) protein (148aa)
Flp pilus minor pilin TadE Tax=Bacteria RepID=B5EAZ2_GEOBB
Flp pilus assembly TadE-like domain-containing protein
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
PLM4_5_b1_sep16_scaffold_710_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2202..3062
DNA (861bp) protein (287aa)
Flp pilus assembly protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LSW2_SYNAS
flp pilus assembly protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_5_b1_sep16_scaffold_710_6
Marinobacter sp. ES-1, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3100..4221
DNA (1122bp) protein (374aa)
Uncharacterized protein Tax=Marinobacter sp. ES-1 RepID=U7FVW6_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:ERP90170.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ES-1.;"
hofQ_[C]; Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
PLM4_5_b1_sep16_scaffold_710_7
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

4231..5250
DNA (1020bp) protein (340aa)
hypothetical protein Tax=Vibrio genomosp. F6 RepID=UPI000306F9F4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_5_b1_sep16_scaffold_710_8
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

5278..6369
DNA (1092bp) protein (364aa)
Flp pilus assembly protein ATPase CpaE-like protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHE9_ANADF
Flp pilus assembly protein ATPase CpaE-like protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM4_5_b1_sep16_scaffold_710_9
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6376..7746
DNA (1371bp) protein (457aa)
Type II secretion system protein E Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C120_NITHN
type II secretion system protein E
Type II secretion system protein E {ECO:0000313|EMBL:ADE14577.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_5_b1_sep16_scaffold_710_10
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7755..8714
DNA (960bp) protein (320aa)
Type II secretion system F domain protein bin=GWC2_Deltaproteobacteria_66_88 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
type II secretion system protein F domain-containing protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_5_b1_sep16_scaffold_710_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

8724..9644
DNA (921bp) protein (307aa)
Tad secretion system, secretion accessory protein Tax=Ralstonia solanacearum (strain Po82) RepID=F6G3W3_RALS8
tadC; tad secretion system, secretion accessory protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_5_b1_sep16_scaffold_710_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10346..11764
DNA (1419bp) protein (473aa)
selenocysteine synthase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKP9_THEM7 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11888..15466
DNA (3579bp) protein (1193aa)
Chromosome partition protein Smc Tax=Rhodothermus marinus RepID=D0MFL5_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
chromosome segregation protein SMC
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15530..16432
DNA (903bp) protein (301aa)
Signal recognition particle receptor FtsY Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCX0_AMMDK bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ftsY; signal recognition particle-docking protein FtsY
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16429..17709
DNA (1281bp) protein (427aa)
Amino acid permease-associated region Tax=Fibrella aestuarina BUZ 2 RepID=I0K794_9BACT
amino acid permease-associated protein
Amino acid permease-associated protein {ECO:0000313|EMBL:AKD55219.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
PLM4_5_b1_sep16_scaffold_710_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(17722..18636)
DNA (915bp) protein (305aa)
id=5223261 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18786..19505
DNA (720bp) protein (240aa)
DNA repair protein RadC Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MEG5_9FIRM bin=16ft_combo_ws3_JS1 species=Pseudoramibacter alactolyticus genus=Pseudoramibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA repair protein RadC
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_18
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

19619..20173
DNA (555bp) protein (185aa)
Putative membrane protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F248_ACIC5
hypothetical protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
PLM4_5_b1_sep16_scaffold_710_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

20170..20760
DNA (591bp) protein (197aa)
hypothetical protein bin=BACIGN_2 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
protein of unknown function DUF1572
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_5_b1_sep16_scaffold_710_20
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

20779..21180
DNA (402bp) protein (134aa)
Tax=CG_Ignavi_01
PLM4_5_b1_sep16_scaffold_710_21
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21194..22450)
DNA (1257bp) protein (419aa)
MFS transporter Tax=Hymenobacter norwichensis RepID=UPI0003B43372
Major facilitator transporter {ECO:0000313|EMBL:GAK45845.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_710_22
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22539..23147
DNA (609bp) protein (203aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thioflavicoccus mobilis 8321.;"
Carbonic anhydrase Tax=Thioflavicoccus mobilis 8321 RepID=L0GS34_9GAMM
carbonic anhydrase
PLM4_5_b1_sep16_scaffold_710_23
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23613..23813
DNA (201bp) protein (67aa)
putative sam-dependent methyltransferase protein (EC:2.1.1.-)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000371F78D
Putative methyltransferase {ECO:0000313|EMBL:EAP74100.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
PLM4_5_b1_sep16_scaffold_710_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23830..24477
DNA (648bp) protein (216aa)
deaminase reductase Tax=Rudaea cellulosilytica RepID=UPI00035F1C55
Dihydrofolate reductase {ECO:0000313|EMBL:EJL71912.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
bifunctional deaminase-reductase domain protein
PLM4_5_b1_sep16_scaffold_710_25
unknown

Not on your lists

24468..25316
DNA (849bp) protein (283aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_710_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25327..25725)
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EIJ1_9CHLR bin=16ft_combo_ws3_JS1 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DoxX family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_710_27
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25880..26149
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Burkholderia graminis C4D1M RepID=B1G6X5_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX15235.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Displaying 27 items

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