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PLM4_5_b1_sep16_scaffold_890

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_890_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..410)
DNA (408bp) protein (136aa)
Serine phosphatase RsbU subunit sigma Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AHT5_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(483..1700)
DNA (1218bp) protein (406aa)
Serine phosphatase RsbU subunit sigma Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AHT5_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protein serine phosphatase with GAF(s) sensor(s)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_3
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

1803..2456
DNA (654bp) protein (218aa)
Acetyltransferase GNAT family protein Tax=uncultured candidate division OP1 bacterium RepID=H5SR70_9BACT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:BAL54833.1}; species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
GCN5-like N-acetyltransferase
PLM4_5_b1_sep16_scaffold_890_4
RLO_PLX_64_10, Bacteria

Not on your lists

comp(2365..3552)
DNA (1188bp) protein (396aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7A6_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_5_b1_sep16_scaffold_890_5
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(3549..5372)
DNA (1824bp) protein (608aa)
Integral membrane sensor signal transduction histidine kinase Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8ALI2_METOI
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:AEH07006.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.;" source="Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1).;"
PLM4_5_b1_sep16_scaffold_890_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5375..6043)
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7A4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_5_b1_sep16_scaffold_890_7
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(6179..7363)
DNA (1185bp) protein (395aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:BAL53327.1}; species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
gcdH; glutaryl-CoA dehydrogenase
PLM4_5_b1_sep16_scaffold_890_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7446..11537)
DNA (4092bp) protein (1364aa)
Putative uncharacterized protein bin=GWC2_Ignavibacteria_56_12 species=Flavobacteriales bacterium ALC-1 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
ASPIC/UnbV
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_9
Jonquetella anthropi, Jonquetella, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

11628..13205
DNA (1578bp) protein (526aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoalteromonas sp. NJ631 genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase {ECO:0000313|EMBL:EHM13802.1}; Flags: Precursor;; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Jonquetella.;" source="Jonquetella anthropi DSM 22815.;"
PLM4_5_b1_sep16_scaffold_890_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13288..15816
DNA (2529bp) protein (843aa)
Putative LmbE-like protein Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVE1_SOLCM bin=16ft_combo_ws3_JS1 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative LmbE-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15913..17640
DNA (1728bp) protein (576aa)
Na+/solute symporter Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ENQ7_RUNSL bin=16ft_combo_ws3_JS1 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sodium solute transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_12
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

17761..19470
DNA (1710bp) protein (570aa)
Putative uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUX8_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
HAF family extracellular repeat-containing protein
Tax=RBG_16_Planctomycetes_59_8_curated
PLM4_5_b1_sep16_scaffold_890_13
Candidatus Cloacimonas acidaminovorans, Candidatus Cloacimonas, Cloacimonetes, Bacteria

Not on your lists

19696..22746
DNA (3051bp) protein (1017aa)
Putative serine peptidase putative signal peptide {ECO:0000313|EMBL:CAO81168.1}; EC=3.4.21.- {ECO:0000313|EMBL:CAO81168.1};; species="Bacteria; Cloacimonetes; Candidatus Cloacimonas.;" source="Cloacamonas acidaminovorans (strain Evry).;"
Putative serine peptidase putative signal peptide Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VIM7_CLOAI
peptidase S8 and S53 subtilisin kexin sedolisin
PLM4_5_b1_sep16_scaffold_890_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(22850..23707)
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Melioribacter roseus (strain P3M) RepID=I6YV80_MELRP bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_890_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23887..26022
DNA (2136bp) protein (712aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit beta (EC:1.2.4.4)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHN3_CHLTF
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_5_b1_sep16_scaffold_890_16
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26074..27063
DNA (990bp) protein (330aa)
Putative uncharacterized protein Tax=Chondromyces crocatus RepID=D7P606_CHOCO
Uncharacterized protein {ECO:0000313|EMBL:EYF04792.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
PLM4_5_b1_sep16_scaffold_890_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27079..27681)
DNA (603bp) protein (201aa)
peptidase S45 penicillin amidase; K01434 penicillin amidase [EC:3.5.1.11] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 17 items

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