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PLM4_5_b1_sep16_scaffold_929

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_929_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3..665)
DNA (663bp) protein (221aa)
SAM-dependent methyltransferase, PUA domain-containing Tax=Geobacter sulfurreducens RepID=D7AL01_GEOSK bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SAM-dependent methyltransferase, PUA domain-containing
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(662..1549)
DNA (888bp) protein (296aa)
Agmatinase Tax=uncultured candidate division OP1 bacterium RepID=H5SQH2_9BACT bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative agmatinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_3
Brachyspira hampsonii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(1684..1905)
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Brachyspira hampsonii 30446 RepID=L0X7X4_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:EKV58113.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira hampsonii 30446.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_929_trna_1
unknown

Not on your lists

comp(2200..2273)
DNA (74bp)
transferRNA Asp
PLM4_5_b1_sep16_scaffold_929_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2363..3772)
DNA (1410bp) protein (470aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7K8_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3769..4983)
DNA (1215bp) protein (405aa)
Anhydro-N-acetylmuramic acid kinase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4J5_THERP bin=16ft_combo_ws3_JS1 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Anhydro-N-acetylmuramic acid kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_6
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4987..6303)
DNA (1317bp) protein (439aa)
beta-lactamase induction signal transducer; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bacteroides massiliensis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
beta-lactamase induction signal transducer
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_5_b1_sep16_scaffold_929_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6311..7555)
DNA (1245bp) protein (415aa)
ABC-type sugar transport system, periplasmic component Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J7U1_MARPK bin=16ft_combo_ws3_JS1 species=Marinitoga piezophila genus=Marinitoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7552..8493)
DNA (942bp) protein (314aa)
RpiR family transcriptional regulator; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RpiR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_9
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(8580..9440)
DNA (861bp) protein (287aa)
GCN5-related N-acetyltransferase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B1H9_HERA2
N-acetyltransferase GCN5
Tax=CG_Anaero_02
PLM4_5_b1_sep16_scaffold_929_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9441..10073)
DNA (633bp) protein (211aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoalteromonas rubra genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10216..11124
DNA (909bp) protein (303aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NII2_DESAR
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11302..12807
DNA (1506bp) protein (502aa)
DNA/RNA helicase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DNA/RNA helicase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(12804..14006)
DNA (1203bp) protein (401aa)
truncated alanyl-tRNA synthetase; K07050 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
truncated alanyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14009..15097)
DNA (1089bp) protein (363aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E6R3_GEOLS
Fis family two component sigma-54 specific transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15160..16107)
DNA (948bp) protein (316aa)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16847..17071
DNA (225bp) protein (75aa)
Cyclic pyranopterin monophosphate synthase accessory protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7Z1_SPHTD
molybdenum cofactor biosynthesis protein C
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17046..18299
DNA (1254bp) protein (418aa)
atm:ANT_16690 moeA; molybdopterin biosynthesis protein MoeA; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
molybdenum cofactor synthesis domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_929_18
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

18395..20329
DNA (1935bp) protein (645aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=GWF2_Lentisphaerae_57_35_curated
PLM4_5_b1_sep16_scaffold_929_19
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20382..21464
DNA (1083bp) protein (361aa)
FMN-dependent alpha-hydroxy acid dehydrogenase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LGI4_HALO1
FMN-dependent alpha-hydroxy acid dehydrogenase
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ACY12730.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_5_b1_sep16_scaffold_929_20
R_Planctomycetes_38_41, Planctomycetes, Bacteria

Not on your lists

comp(21461..24658)
DNA (3198bp) protein (1066aa)
Heavy metal efflux pump CzcA Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ87_THIDA
heavy metal efflux pump CzcA
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
PLM4_5_b1_sep16_scaffold_929_21
R_Gammaproteobacteria_40_19, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24648..25916)
DNA (1269bp) protein (423aa)
hypothetical protein Tax=Legionella shakespearei RepID=UPI000366813E
HelB protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_40_19_curated
PLM4_5_b1_sep16_scaffold_929_22
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25913..27241)
DNA (1329bp) protein (443aa)
Outer membrane efflux protein bin=GWC2_Pelobacter_58_13 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
cobalt/zinc/cadmium resistance protein CzcC
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_5_b1_sep16_scaffold_929_23
unknown

Not on your lists

comp(27319..27711)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_929_24
Deinococcus deserti, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(27770..28336)
DNA (567bp) protein (189aa)
acetyltransferase Tax=Streptomyces somaliensis RepID=UPI00029A0EF0
acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:ACO47734.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923).;"
PLM4_5_b1_sep16_scaffold_929_25
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(28318..28560)
DNA (243bp) protein (81aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022L3_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84087.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Displaying 26 items

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