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PLM4_5_b1_sep16_scaffold_7973

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_7973_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2..709
DNA (708bp) protein (236aa)
ABC-2 type transporter Tax=Rhodopirellula maiorica SM1 RepID=M5S114_9PLAN bin=16ft_combo_ws3_JS1 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter permease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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712..1182
DNA (471bp) protein (157aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1331..1741
DNA (411bp) protein (137aa)
anti-sigma regulatory factor, serine/threonine protein kinase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
anti-sigma regulatory factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1741..2025
DNA (285bp) protein (95aa)
Anti-anti-sigma regulatory factor, SpoIIAA Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CYD8_METMJ bin=16ft_combo_ws3_JS1 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
anti-sigma factor antagonist
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2109..2651
DNA (543bp) protein (181aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_6
unknown

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2648..3397
DNA (750bp) protein (250aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_7973_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3501..4355
DNA (855bp) protein (285aa)
C protein immunoglobulin-A-binding beta antigen bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Toxoplasma gondii genus=Toxoplasma taxon_order=Eucoccidiorida taxon_class=Coccidia phylum=Apicomplexa tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_7973_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4663..7407
DNA (2745bp) protein (915aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Prevotella ruminicola genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 8 items

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