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PLM4_5_b1_sep16_scaffold_5215

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_5215_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1..354
DNA (354bp) protein (118aa)
outer membrane efflux protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5215_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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351..1712
DNA (1362bp) protein (454aa)
Efflux transporter, RND family, MFP subunit Tax=Holophaga foetida DSM 6591 RepID=H1P089_9BACT bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cation efflux system protein CusB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5215_3
R_WOR_2_68_15, WOR-2, Bacteria

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comp(1648..2715)
DNA (1068bp) protein (356aa)
Putative uncharacterized protein bin=GWC2_Elusimicrobia_64_44 species=Brevundimonas diminuta genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM4_5_b1_sep16_scaffold_5215_4
unknown

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comp(2715..2888)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_5215_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2933..5047
DNA (2115bp) protein (705aa)
Probable cation efflux system transmembrane protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FLT6_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CzcA family heavy metal efflux protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5215_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5044..5646
DNA (603bp) protein (201aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C906D
bacteriocin-protection protein, YdeI/OmpD-associated family
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_5_b1_sep16_scaffold_5215_7
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5618..8359)
DNA (2742bp) protein (914aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWE3_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE07799.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_5_b1_sep16_scaffold_5215_8
unknown

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8506..9396
DNA (891bp) protein (297aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_5215_9
unknown

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9393..10325
DNA (933bp) protein (311aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_5215_10
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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comp(10443..12848)
DNA (2406bp) protein (802aa)
Putative peptidase Tax=Microcystis aeruginosa PCC 9443 RepID=I4G2A9_MICAE
peptidase s8 and s53 subtilisin kexin sedolisin
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_5_b1_sep16_scaffold_5215_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13057..13983
DNA (927bp) protein (309aa)
Cation diffusion facilitator family transporter Tax=Gordonibacter pamelaeae 7-10-1-b RepID=D6E6X7_9ACTN bin=16ft_combo_ws3_JS1 species=Gordonibacter pamelaeae genus=Gordonibacter taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cation diffusion facilitator family transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5215_12
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14026..14382
DNA (357bp) protein (119aa)
UPI000299E523 related cluster Tax=unknown RepID=UPI000299E523 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sodium/hydrogen exchanger
Tax=RBG_16_Gammaproteobacteria_66_13_curated
Displaying 12 items

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