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PLM4_32_b1_sep16_scaffold_1001

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1001_1
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1..1839)
DNA (1839bp) protein (613aa)
Cyclolysin Tax=Microcystis aeruginosa SPC777 RepID=S3JSN6_MICAE
Cyclolysin {ECO:0000313|EMBL:EPF16154.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa SPC777.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_1001_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1965..2651
DNA (687bp) protein (229aa)
FMN-binding negative transcriptional regulator Tax=Chthoniobacter flavus Ellin428 RepID=B4CW31_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETX00108.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
regulatory protein
PLM4_32_b1_sep16_scaffold_1001_3
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

2712..5201
DNA (2490bp) protein (830aa)
TPR repeat-containing serine/threonin protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RBG_16_Zixibacteria_48_11_curated
PLM4_32_b1_sep16_scaffold_1001_4
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5221..5976)
DNA (756bp) protein (252aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000379278D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ31819.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
PLM4_32_b1_sep16_scaffold_1001_5
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5985..7151)
DNA (1167bp) protein (389aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
formate-dependent phosphoribosylglycinamide formyltransferase (EC:6.3.4.-)
Phosphoribosylglycinamide formyltransferase 2 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MW22_9CYAN
PLM4_32_b1_sep16_scaffold_1001_6

Not on your lists

comp(7213..7683)
DNA (471bp) protein (157aa)
Marine sediment metagenome DNA, contig: S01H1_S10385 {ECO:0000313|EMBL:GAG01188.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Transcriptional regulator, MerR family bin=GWC2_Chloroflexi_73_18 species=unknown genus=Salinispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
AraC family transcriptional regulator
PLM4_32_b1_sep16_scaffold_1001_7
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(7951..8535)
DNA (585bp) protein (195aa)
DNA-3-methyladenine glycosylase I bin=GWC2_Nitrospirae-rel_56_14 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
DNA-3-methyladenine glycosylase I
Tax=RBG_16_Chloroflexi_63_12_curated
PLM4_32_b1_sep16_scaffold_1001_8
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8739..9716)
DNA (978bp) protein (326aa)
Peptidase S58, DmpA Tax=Variovorax paradoxus (strain S110) RepID=C5D0U3_VARPS
Uncharacterized protein {ECO:0000313|EMBL:KIL38929.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
peptidase S58, DmpA
PLM4_32_b1_sep16_scaffold_1001_9
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

9857..11665
DNA (1809bp) protein (603aa)
hypothetical protein Tax=Nafulsella turpanensis RepID=UPI000346483F
hypothetical protein
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_32_b1_sep16_scaffold_1001_10
unknown

Not on your lists

comp(11750..12142)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1001_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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12306..13853
DNA (1548bp) protein (516aa)
Peroxisomal-coenzyme A synthetase Tax=Neurospora tetrasperma (strain FGSC 2508 / ATCC MYA-4615 / P0657) RepID=F8MB51_NEUT8
AMP-dependent synthetase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_32_b1_sep16_scaffold_1001_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13858..14994
DNA (1137bp) protein (379aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FN35_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN98387.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM4_32_b1_sep16_scaffold_1001_13
unknown

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15065..15478
DNA (414bp) protein (138aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1001_14
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

comp(15475..17463)
DNA (1989bp) protein (663aa)
oligopeptidase B (EC:3.4.21.83)
Peptidase S9A prolyl oligopeptidase domain protein beta-propeller Tax=Caldithrix abyssi DSM 13497 RepID=H1XPJ5_9BACT
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_32_b1_sep16_scaffold_1001_15
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(17460..18794)
DNA (1335bp) protein (445aa)
putative threonine synthase; K01733 threonine synthase [EC:4.2.3.1] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
putative threonine synthase
Tax=RBG_13_Ignavibacteria_36_8_curated
PLM4_32_b1_sep16_scaffold_1001_16
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18839..19240)
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV82_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF52440.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
PLM4_32_b1_sep16_scaffold_1001_17
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

19451..22393
DNA (2943bp) protein (981aa)
peptidase M28 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3C063
Putative uncharacterized protein {ECO:0000313|EMBL:CAJ70990.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
component of the Tol biopolymer transport system
PLM4_32_b1_sep16_scaffold_1001_18
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22408..23238
DNA (831bp) protein (277aa)
Peptidase M48, Ste24p Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AU50_PELPD
peptidase M48, Ste24p
Peptidase M48, Ste24p {ECO:0000313|EMBL:ABL00871.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_32_b1_sep16_scaffold_1001_19
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23245..23892
DNA (648bp) protein (216aa)
Protein dedA {ECO:0000313|EMBL:CDH46944.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein; K03975 membrane-associated protein bin=RBG_16_Aminicenantes_63_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
PLM4_32_b1_sep16_scaffold_1001_20
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

24197..27280
DNA (3084bp) protein (1028aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bradyrhizobium sp. DFCI-1 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_b1_sep16_scaffold_1001_21
CG_CP01_01, CG_CP01, Bacteria

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27294..28598
DNA (1305bp) protein (435aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=GWA2_Elusimicrobia_66_18 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
Tax=CG_CP01_01
PLM4_32_b1_sep16_scaffold_1001_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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29596..31701
DNA (2106bp) protein (702aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Balneola vulgaris genus=Balneola taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

31718..32419
DNA (702bp) protein (234aa)
MotA/TolQ/ExbB proton channel bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
MotA/TolQ/ExbB proton channel
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

32424..32840
DNA (417bp) protein (139aa)
Biopolymer transport protein; K03559 biopolymer transport protein ExbD bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aeromonas caviae genus=Aeromonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
biopolymer transport protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

32843..33271
DNA (429bp) protein (143aa)
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TonB system transport protein ExbD2
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33264..34229
DNA (966bp) protein (322aa)
id=24540277 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

34255..35187
DNA (933bp) protein (311aa)
id=24540276 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1001_28
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(35207..36640)
DNA (1434bp) protein (478aa)
ial:IALB_1280 Glucose/sorbosone dehydrogenase bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
PQQ-dependent glucose dehydrogenase {ECO:0000313|EMBL:GAN32389.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
protein up-regulated by thyroid hormone-putative PQQ-dependent glucose dehydrogenase
PLM4_32_b1_sep16_scaffold_1001_29
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36719..37906)
DNA (1188bp) protein (396aa)
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Planctomyces maris DSM 8797 RepID=A6CFH5_9PLAN
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
PLM4_32_b1_sep16_scaffold_1001_30
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37986..38438)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Cupriavidus sp. HMR-1 RepID=L2EC08_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKZ96468.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
hypothetical protein
Displaying items 1-30 of 36 in total

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