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PLM4_32_b1_sep16_scaffold_175

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_175_1
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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2..187
DNA (186bp) protein (62aa)
citB; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000313|EMBL:BAA80618.2}; EC=4.2.1.3 {ECO:0000313|EMBL:BAA80618.2};; species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
Aconitate hydratase Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9YBI0_AERPE
PLM4_32_b1_sep16_scaffold_175_2
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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356..982
DNA (627bp) protein (209aa)
hypothetical protein Tax=Synechococcus sp. PCC 7336 RepID=UPI00034B5298
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:AGY56856.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM4_32_b1_sep16_scaffold_175_3

Not on your lists

comp(1084..3306)
DNA (2223bp) protein (741aa)
Amidohydrolase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NRX5_GRAMM
Cytosine deaminase and related metal-dependent hydrolase protein {ECO:0000313|EMBL:AIF19785.1}; species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_87_G01.;"
amidohydrolase
PLM4_32_b1_sep16_scaffold_175_4
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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3595..4494
DNA (900bp) protein (300aa)
Uncharacterized protein Tax=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) RepID=D4ZJ13_SHEVD bin=16ft_combo_ws3_JS1 species=Shewanella violacea genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
tetratricopeptide repeat protein,protein kinase family protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_32_b1_sep16_scaffold_175_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4710..6026
DNA (1317bp) protein (439aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Shewanella violacea genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_175_6
unknown

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6092..6289
DNA (198bp) protein (66aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_7
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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6661..8676
DNA (2016bp) protein (672aa)
FG-GAP repeat domain protein Tax=Microscilla marina ATCC 23134 RepID=A1ZP22_9BACT bin=16ft_combo_ws3_JS1 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=CG_Deferri_01
PLM4_32_b1_sep16_scaffold_175_8
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9191..11170
DNA (1980bp) protein (660aa)
Putative uncharacterized protein Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11R21_CYTH3
FG-GAP repeat-containing protein
Tax=GWC2_Ignavibacteria_rel_36_12_curated
PLM4_32_b1_sep16_scaffold_175_9
unknown

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11367..12374
DNA (1008bp) protein (336aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_10
unknown

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comp(12540..13052)
DNA (513bp) protein (171aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_11
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13223..13675)
DNA (453bp) protein (151aa)
Tax=CG_Delta_03
PLM4_32_b1_sep16_scaffold_175_12
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(13712..15847)
DNA (2136bp) protein (712aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I945_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01783.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_32_b1_sep16_scaffold_175_13
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16037..17986)
DNA (1950bp) protein (650aa)
Cell surface protein, putative bin=GWF2_Bacteroidetes_38_335 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
exported nucleotide-binding protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM4_32_b1_sep16_scaffold_175_14
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18169..18798
DNA (630bp) protein (210aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. L_1B5_3.;"
Carbonic anhydrase Tax=Aeromonas media WS RepID=K2IAQ6_AERME
carbonic anhydrase
PLM4_32_b1_sep16_scaffold_175_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19010..21292
DNA (2283bp) protein (761aa)
Glycosyltransferase, group 1 family protein Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0G995_9LEPT
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_32_b1_sep16_scaffold_175_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21289..22227
DNA (939bp) protein (313aa)
Glycosidase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycosidase-like protein
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_32_b1_sep16_scaffold_175_17
unknown

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comp(22255..22422)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(22543..22863)
DNA (321bp) protein (107aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037465AF
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_32_b1_sep16_scaffold_175_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

23047..23901
DNA (855bp) protein (285aa)
XRE family transcriptional regulator bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
XRE family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_32_b1_sep16_scaffold_175_20
unknown

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24179..24403
DNA (225bp) protein (75aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_21
unknown

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24572..24964
DNA (393bp) protein (131aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_22
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

25719..29060
DNA (3342bp) protein (1114aa)
Putative serine/threonine protein kinase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I561_CALAS
putative serine/threonine protein kinase
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAM00399.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_32_b1_sep16_scaffold_175_23
unknown

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comp(29086..29259)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_24
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

30075..33092
DNA (3018bp) protein (1006aa)
protein kinase (EC:2.7.11.1) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
bacterial regulatory, Fis family protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_175_25
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33125..34813)
DNA (1689bp) protein (563aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. pacificus DSM 12653.;"
Formate--tetrahydrofolate ligase Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7RA62_9THEO
MIS1; formyltetrahydrofolate synthetase
PLM4_32_b1_sep16_scaffold_175_26
unknown

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34958..35512
DNA (555bp) protein (185aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_27
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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comp(35530..38367)
DNA (2838bp) protein (946aa)
Cell surface protein Tax=Thermosipho africanus H17ap60334 RepID=K2NMX0_9THEM
peptidase M4, thermolysin
Tax=RBG_13_Chloroflexi_46_14_curated
PLM4_32_b1_sep16_scaffold_175_28
unknown

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38590..39153
DNA (564bp) protein (188aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_175_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

39157..40839
DNA (1683bp) protein (561aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI000370155E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_175_30
unknown

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40839..41378
DNA (540bp) protein (180aa)

This feature has no annotations

Displaying items 1-30 of 81 in total

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