ggKbase home page

PLM4_32_b1_sep16_scaffold_202

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_202_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..238)
DNA (237bp) protein (79aa)
Radical SAM domain protein bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Radical SAM domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_202_2
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

312..656
DNA (345bp) protein (115aa)
Cupin domain-containing protein Tax=Acidovorax sp. CF316 RepID=J1EN43_9BURK
Cupin domain-containing protein {ECO:0000313|EMBL:EJE53589.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
cupin
PLM4_32_b1_sep16_scaffold_202_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

740..2788
DNA (2049bp) protein (683aa)
3-isopropylmalate dehydratase large subunit Tax=Aquifex aeolicus (strain VF5) RepID=LEUC_AQUAE bin=16ft_combo_ws3_JS1 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
homoaconitate hydratase family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_32_b1_sep16_scaffold_202_4
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

2788..3780
DNA (993bp) protein (331aa)
Voltage-dependent potassium channel, beta subunit Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE43_RHOMR
voltage-dependent potassium channel subunit beta
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
PLM4_32_b1_sep16_scaffold_202_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4663..6561
DNA (1899bp) protein (633aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:ABF42508.1}; EC=1.2.4.2 {ECO:0000313|EMBL:ABF42508.1};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
2-oxoglutarate dehydrogenase E1 component Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKU2_KORVE
sucA; 2-oxoglutarate dehydrogenase E1
PLM4_32_b1_sep16_scaffold_202_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6754..8433
DNA (1680bp) protein (560aa)
diguanylate cyclase bin=bin3_NC10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
diguanylate cyclase
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_202_7
Thermoanaerobacter mathranii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8783..9526)
DNA (744bp) protein (248aa)
Copper amine oxidase domain protein Tax=Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) RepID=D7AT41_THEM3
copper amine oxidase domain-containing protein
Copper amine oxidase domain protein {ECO:0000313|EMBL:ADH61837.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3).;"
PLM4_32_b1_sep16_scaffold_202_8
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9633..10256)
DNA (624bp) protein (208aa)
BioY protein Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5E982_METMS
BioY protein
BioY protein {ECO:0000313|EMBL:ADE35733.1}; Flags: Precursor;; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalophilus.;" source="Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP).;"
PLM4_32_b1_sep16_scaffold_202_9
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(10348..11493)
DNA (1146bp) protein (382aa)
HAD superfamily (Subfamily IG) hydrolase, 5'-nucleotidase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBS6_ANADF
HAD family hydrolase 5'-nucleotidase
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_32_b1_sep16_scaffold_202_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11783..12208
DNA (426bp) protein (142aa)
hypothetical protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5284F
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_202_11
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12283..13884)
DNA (1602bp) protein (534aa)
etf-QO; electron transfer flavoprotein-ubiquinone oxidoreductase (EC:1.5.5.1)
Electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Tax=mine drainage metagenome RepID=E6PG49_9ZZZZ bin=16ft_combo_ws3_JS1 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_32_b1_sep16_scaffold_202_12
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14075..14608
DNA (534bp) protein (178aa)
NADH-quinone oxidoreductase subunit I bin=GWC2_Proteo_65_14_Ab886 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
4Fe-4S ferredoxin
Tax=GWA2_Deltaproteobacteria_45_12_curated
PLM4_32_b1_sep16_scaffold_202_13
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(14619..16031)
DNA (1413bp) protein (471aa)
FAD/FMN-dependent dehydrogenase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=RBG_16_Zixibacteria_48_11_curated
PLM4_32_b1_sep16_scaffold_202_14
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16197..17441)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AX69_SYNWW
Uncharacterized protein {ECO:0000313|EMBL:AKF10289.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_202_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(17453..18667)
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Spirosoma luteum RepID=UPI00035C0B0C
Ig domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_32_b1_sep16_scaffold_202_16
unknown

Not on your lists

comp(18794..19189)
DNA (396bp) protein (132aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_17
GWA2_Deltaproteobacteria_45_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19383..20312
DNA (930bp) protein (310aa)
Malate dehydrogenase Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=MDH_METPB
malate dehydrogenase
Tax=GWA2_Deltaproteobacteria_45_12_curated
PLM4_32_b1_sep16_scaffold_202_18
RLO_PLX_64_10, Bacteria

Not on your lists

20347..21111
DNA (765bp) protein (255aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B30EAA
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_202_19
unknown

Not on your lists

comp(21121..21735)
DNA (615bp) protein (205aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_20
unknown

Not on your lists

comp(21774..22109)
DNA (336bp) protein (112aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_21
unknown

Not on your lists

22415..22801
DNA (387bp) protein (129aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_22
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(22802..24835)
DNA (2034bp) protein (678aa)
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_32_b1_sep16_scaffold_202_23
unknown

Not on your lists

comp(25009..25386)
DNA (378bp) protein (126aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_24
unknown

Not on your lists

25666..26553
DNA (888bp) protein (296aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_202_25
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26572..27717)
DNA (1146bp) protein (382aa)
Putative O-linked N-acetylglucosamine transferase, SPINDLY family bin=GWE1_T_denit_62_9 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
PLM4_32_b1_sep16_scaffold_202_26

Not on your lists

comp(27794..28228)
DNA (435bp) protein (145aa)
Putative uncharacterized protein Tax=sediment metagenome RepID=D9PLL2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:EFK95556.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_202_27
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

Not on your lists

comp(28428..29192)
DNA (765bp) protein (255aa)
membrane protein Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003AAF911
hypothetical protein
Tax=RBG_16_Zixibacteria_48_11_curated
PLM4_32_b1_sep16_scaffold_202_28
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29213..30556)
DNA (1344bp) protein (448aa)
Membrane-bound serine protease NfeD, long form Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74AE5_GEOSL
serine protease
Serine protease {ECO:0000313|EMBL:AJE03956.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_32_b1_sep16_scaffold_202_29
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30733..31272
DNA (540bp) protein (180aa)
putative HNH endonuclease (EC:3.1.-.-) bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
HNH endonuclease
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_32_b1_sep16_scaffold_202_trna_2
unknown

Not on your lists

comp(31317..31400)
DNA (84bp)
transferRNA Leu
Displaying items 1-30 of 74 in total

View Taxonomy