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PLM4_32_b1_sep16_scaffold_261

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_261_1
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..582)
DNA (582bp) protein (194aa)
Putative uncharacterized protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67PS1_SYMTH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAD40322.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
PLM4_32_b1_sep16_scaffold_261_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

706..2184
DNA (1479bp) protein (493aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG18_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY49507.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_32_b1_sep16_scaffold_261_3
unknown

Not on your lists

comp(2633..2881)
DNA (249bp) protein (83aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_261_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(2949..4550)
DNA (1602bp) protein (534aa)
Selenocysteine-specific translation elongation factor Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADE4_THEID
selB; selenocysteine-specific elongation factor
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_32_b1_sep16_scaffold_261_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4863..6116)
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Geobacter RepID=MURA_GEOMG bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_261_6
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6366..7247)
DNA (882bp) protein (294aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Release factor glutamine methyltransferase Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67TD4_SYMTH
protoporphyrinogen oxidase
PLM4_32_b1_sep16_scaffold_261_7
RLO_PLX_64_10, Bacteria

Not on your lists

comp(7250..8329)
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S010_THEOJ
peptide chain release factor 1 (bRF-1)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_261_8
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

comp(8384..9292)
DNA (909bp) protein (303aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_32_b1_sep16_scaffold_261_9
CG_Magasa_02, Magasanikbacteria, Parcubacteria, Bacteria

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comp(9302..9568)
DNA (267bp) protein (89aa)
50S ribosomal protein L31 Tax=uncultured bacterium RepID=K2AJI1_9BACT
50S ribosomal protein L31
Tax=CG_Magasa_02
PLM4_32_b1_sep16_scaffold_261_10
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

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comp(9652..10686)
DNA (1035bp) protein (345aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) RepID=G7VAG6_THELD
Tetratricopeptide TPR_1 repeat-containing protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AER67616.1}; Flags: Precursor;; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermovirga.;" source="Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314).;"
PLM4_32_b1_sep16_scaffold_261_11
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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comp(10802..12049)
DNA (1248bp) protein (416aa)
Transcription termination factor Rho Tax=Caldithrix abyssi DSM 13497 RepID=H1XU49_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rho; transcription termination factor Rho
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_261_12
Thermovirga lienii, Thermovirga, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(12341..13402)
DNA (1062bp) protein (354aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) RepID=G7VAG6_THELD
Tetratricopeptide TPR_1 repeat-containing protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AER67616.1}; Flags: Precursor;; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Thermovirga.;" source="Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314).;"
PLM4_32_b1_sep16_scaffold_261_13
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(13832..16087)
DNA (2256bp) protein (752aa)
Primosomal protein N' Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L7U9_9BACI
primosomal protein N''
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM4_32_b1_sep16_scaffold_261_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16401..16778)
DNA (378bp) protein (126aa)
Two component transcriptional regulator, winged helix family Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2V2_THEOJ bin=16ft_combo_ws3_JS1 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component transcriptional regulator, winged helix family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_261_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16809..20114)
DNA (3306bp) protein (1102aa)
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing Tax=Geobacter metallireducens RepID=Q39U54_GEOMG bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_261_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20137..23148)
DNA (3012bp) protein (1004aa)
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing Tax=Geobacter sulfurreducens RepID=D7AKD6_GEOSK bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_261_17
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(23145..23975)
DNA (831bp) protein (277aa)
Multi-sensor hybrid histidine kinase Tax=Cyanothece sp. PCC 7822 RepID=E0UL00_CYAP2 bin=RBG9 species=Cyanothece sp. PCC 7822 genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=RBG9 organism_group=Chloroflexi
sensor histidine kinase
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM4_32_b1_sep16_scaffold_261_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24000..24980)
DNA (981bp) protein (327aa)
Response regulator receiver modulated diguanylate cyclase Tax=Clostridium thermocellum RepID=A3DGE7_CLOTH bin=16ft_combo_ws3_JS1 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
OmpR5; response regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_261_19
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(25189..26205)
DNA (1017bp) protein (339aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PNV5_9FIRM
PLM4_32_b1_sep16_scaffold_261_20
Neisseria weaveri, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26228..26566)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II Tax=Neisseria weaveri RepID=G2DKB7_9NEIS
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EGV38075.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria weaveri LMG 5135.;"
nitrogen regulatory protein P-II
PLM4_32_b1_sep16_scaffold_261_21
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

26755..29565
DNA (2811bp) protein (937aa)
(glutamate--ammonia-ligase) adenylyltransferase (EC:2.7.7.42)
Glutamate-ammonia-ligase adenylyltransferase bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_32_b1_sep16_scaffold_261_22
unknown

Not on your lists

29577..29906
DNA (330bp) protein (110aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_261_23
RLO_PLX_64_10, Bacteria

Not on your lists

comp(29933..30187)
DNA (255bp) protein (85aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
metal dependent phosphohydrolase (EC:2.7.7.59)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_261_24
unknown

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30885..31073
DNA (189bp) protein (63aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_261_25
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(32591..33943)
DNA (1353bp) protein (451aa)
Putative uncharacterized protein bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
PLM4_32_b1_sep16_scaffold_261_26
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34187..36109)
DNA (1923bp) protein (641aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9G914_SORC5
Uncharacterized protein {ECO:0000313|EMBL:AGP42060.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_261_27
RLO_PLX_64_10, Bacteria

Not on your lists

comp(36325..37746)
DNA (1422bp) protein (474aa)
Glutamine synthetase bin=GWC2_Nitrospirae-rel_56_14 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
glnA; glutamine synthetase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_261_28
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

comp(37899..39563)
DNA (1665bp) protein (555aa)
Carbohydrate kinase Tax=uncultured candidate division OP1 bacterium RepID=H5ST71_9BACT
Carbohydrate kinase {ECO:0000313|EMBL:BAL59357.1}; species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
carbohydrate kinase
PLM4_32_b1_sep16_scaffold_261_29
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39560..39895)
DNA (336bp) protein (112aa)
mRNA interferase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH91_DESAR
transcriptional modulator of MazE/toxin MazF
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_32_b1_sep16_scaffold_261_30
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39883..40164)
DNA (282bp) protein (94aa)
SpoVT/AbrB domain-containing protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NH90_DESAR
SpoVT/AbrB domain-containing protein
SpoVT/AbrB domain-containing protein {ECO:0000313|EMBL:AEB08932.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
Displaying items 1-30 of 40 in total

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