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PLM4_32_b1_sep16_scaffold_385

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_385_1
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(1..957)
DNA (957bp) protein (319aa)
Cytochrome bc complex cytochrome b subunit bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
petB; cytochrome bc complex cytochrome b subunit
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_32_b1_sep16_scaffold_385_2
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(964..1395)
DNA (432bp) protein (144aa)
Plastoquinol--plastocyanin reductase (EC:1.10.9.1)
Cytochrome b6-f complex iron-sulfur subunit bin=GWF2_Ignavibacteria_35_20 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_32_b1_sep16_scaffold_385_3
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1563..3692
DNA (2130bp) protein (710aa)
Putative Cytochrome b subunit of formate dehydrogenase-like protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLM0_9BACT
Cytochrome b subunit of formate dehydrogenase-like protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_32_b1_sep16_scaffold_385_4
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

3818..4408
DNA (591bp) protein (197aa)
cytochrome C554 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B682EA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_32_b1_sep16_scaffold_385_5

Not on your lists

comp(4521..7352)
DNA (2832bp) protein (944aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN60529.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWF2_Bacteroidetes_49_14 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
cytochrome b subunit of formate dehydrogenase-like protein
PLM4_32_b1_sep16_scaffold_385_6
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(7300..8814)
DNA (1515bp) protein (505aa)
cytochrome c family protein bin=bin1_lowGC species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin1_lowGC organism_group=Unknown_CP
cytochrome c family protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_32_b1_sep16_scaffold_385_7
GWA2_Melainabacteria_34_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(8982..9380)
DNA (399bp) protein (133aa)
Two component transcriptional regulator, winged helix family Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYR8_9CHLR
XRE family transcriptional regulator
Tax=GWA2_Melainabacteria_34_9_curated
PLM4_32_b1_sep16_scaffold_385_8
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9377..10936)
DNA (1560bp) protein (520aa)
histidine kinase, partial Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B50345
histidine kinase PhoR1
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_32_b1_sep16_scaffold_385_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11136..13022)
DNA (1887bp) protein (629aa)
Multi-sensor signal transduction histidine kinase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHY3_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_385_10
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13089..13982)
DNA (894bp) protein (298aa)
Ppx/GppA phosphatase Tax=Methanolobus psychrophilus R15 RepID=K4MAS2_9EURY
Ppx/GppA phosphatase
Ppx/GppA phosphatase {ECO:0000313|EMBL:AFV22594.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psychrophilus R15.;"
PLM4_32_b1_sep16_scaffold_385_11
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(13979..14746)
DNA (768bp) protein (256aa)
sixA; phosphohistidine phosphatase SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-] bin=bin5_DeltaP species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin5_DeltaP organism_group=Deltaproteobacteria
phosphohistidine phosphatase SixA
Tax=RBG_13_OP8X_37_8_curated
PLM4_32_b1_sep16_scaffold_385_12
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14760..16304)
DNA (1545bp) protein (515aa)
CHAD domain containing protein Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RC96_DESPD
Chad domain containing protein {ECO:0000313|EMBL:KHQ53814.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
CHAD domain-containing protein
PLM4_32_b1_sep16_scaffold_385_13
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(16297..18363)
DNA (2067bp) protein (689aa)
UPI0003D1A996 related cluster Tax=unknown RepID=UPI0003D1A996
Polyphosphate kinase
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_32_b1_sep16_scaffold_385_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18497..22147)
DNA (3651bp) protein (1217aa)
UvrABC system protein A Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM04_THEM7
excinuclease ABC subunit A
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_385_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

22244..23062
DNA (819bp) protein (273aa)
MazG family protein Tax=Oceanibaculum indicum P24 RepID=K2ILB0_9PROT
protein mazG
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_32_b1_sep16_scaffold_385_16
GWF2_WWE1X_40_14_curated, WWE1X, Bacteria

Not on your lists

comp(23161..24330)
DNA (1170bp) protein (390aa)
OmpA domain protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D0T6_MYXXD
OmpA domain-containing protein
Tax=GWF2_WWE1X_40_14_curated
PLM4_32_b1_sep16_scaffold_385_17
unknown

Not on your lists

24519..24764
DNA (246bp) protein (82aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_385_18
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(25180..25506)
DNA (327bp) protein (109aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MPB7_9BACT
hypothetical protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_32_b1_sep16_scaffold_385_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(25587..26162)
DNA (576bp) protein (192aa)
XRE family transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium sp. genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative transcriptional regulator, XRE family with cupin domain
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_385_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26159..26710)
DNA (552bp) protein (184aa)
MerR family transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_385_21
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26733..27872
DNA (1140bp) protein (380aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX07971.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
glycosyl transferase family 9
heptosyltransferase family protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
PLM4_32_b1_sep16_scaffold_385_22
bacterium UASB14, Bacteria

Not on your lists

27869..29149
DNA (1281bp) protein (427aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003654F0A
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:GAK51771.1}; species="Bacteria.;" source="bacterium UASB14.;"
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
PLM4_32_b1_sep16_scaffold_385_23
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

29119..30051
DNA (933bp) protein (311aa)
Fe-S oxidoreductases bin=GWF2_OP3_38_59 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
radical SAM domain protein (DUF4008 domain)
Tax=RBG_13_RIF08_66_14_curated
PLM4_32_b1_sep16_scaffold_385_24
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30573..31040)
DNA (468bp) protein (156aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBZ6_THET1
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM4_32_b1_sep16_scaffold_385_25
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31042..32064)
DNA (1023bp) protein (341aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
Phosphoribosylamine--glycine ligase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2E2_CALAS
purD; phosphoribosylamine--glycine ligase
Displaying 25 items

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