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PLM4_32_b1_sep16_scaffold_616

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_616_1
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..204)
DNA (204bp) protein (68aa)
aldehyde dehydrogenase Tax=Burkholderia kururiensis RepID=UPI000345E3E5
Aldehyde dehydrogenase {ECO:0000313|EMBL:KAK46789.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
aldehyde dehydrogenase family protein
PLM4_32_b1_sep16_scaffold_616_2
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(402..1841)
DNA (1440bp) protein (480aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036C9D5C
PykF; pyruvate kinase
PLM4_32_b1_sep16_scaffold_616_3
unknown

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comp(1875..2309)
DNA (435bp) protein (145aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_616_4
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2306..3223)
DNA (918bp) protein (306aa)
Putative uncharacterized protein Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VZZ4_DESAO
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM4_32_b1_sep16_scaffold_616_5
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3220..5055)
DNA (1836bp) protein (612aa)
Nudix hydrolase 3 protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TUT2_9DELT
Nudix hydrolase 3 protein {ECO:0000313|EMBL:ERK89224.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_616_6
RLO_OP11_Levybacteria_39_17, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(5052..6440)
DNA (1389bp) protein (463aa)
tai:Taci_0468 phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
Phosphomannomutase
Tax=RIFCSPLOWO2_12_FULL_OP11_Levybacteria_39_17_curated
PLM4_32_b1_sep16_scaffold_616_7

Not on your lists

comp(6475..7941)
DNA (1467bp) protein (489aa)
Putative uncharacterized protein Tax=uncultured marine bacterium HF10_49E08 RepID=A4GIC5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKL77106.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transglutaminase
PLM4_32_b1_sep16_scaffold_616_8
Turneriella parva, Turneriella, Spirochaetia, Spirochaetes, Bacteria

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comp(8063..8527)
DNA (465bp) protein (155aa)
Heat shock protein Hsp20 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B469_TURPD
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:AFM12076.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Turneriella.;" source="Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H); (Leptospira parva).;"
PLM4_32_b1_sep16_scaffold_616_9
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

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comp(8760..10121)
DNA (1362bp) protein (454aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B598B7
major facilitator superfamily transporter
Tax=RBG_16_Zixibacteria_40_9_curated
PLM4_32_b1_sep16_scaffold_616_10
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

10318..10749
DNA (432bp) protein (144aa)
acpS; Holo-ACP synthase (EC:2.7.8.7)
4''''-phosphopantetheinyl transferase Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B3E97D
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_32_b1_sep16_scaffold_616_11
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10762..11793)
DNA (1032bp) protein (344aa)
Muconate cycloisomerase Tax=Cystobacter fuscus DSM 2262 RepID=S9PQB0_9DELT
L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:KFA86859.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
mandelate racemase/muconate lactonizing enzyme
PLM4_32_b1_sep16_scaffold_616_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(11830..12894)
DNA (1065bp) protein (355aa)
Uncharacterized protein Tax=Burkholderia RepID=A4JNN9_BURVG bin=16ft_combo_ws3_JS1 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protein of unknown function DUF1611
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_616_13
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12911..13891)
DNA (981bp) protein (327aa)
Transporter, DUF21, CBS domain pair and CorC_HlyC domain-containing, putative bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_32_b1_sep16_scaffold_616_14
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(13888..15129)
DNA (1242bp) protein (414aa)
Integral membrane protein with CBS domains Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BXB5_METCG
integral membrane protein
Integral membrane protein with CBS domains {ECO:0000313|EMBL:AEB67428.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
PLM4_32_b1_sep16_scaffold_616_15
unknown

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comp(15214..15759)
DNA (546bp) protein (182aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_616_16
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(15826..16224)
DNA (399bp) protein (133aa)
Peptidoglycan-associated lipoprotein Tax=Geobacter sp. (strain FRC-32) RepID=B9M348_GEOSF bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
peptidoglycan-associated lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_32_b1_sep16_scaffold_616_17
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(16415..17647)
DNA (1233bp) protein (411aa)
Protein TolB bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
tolB; protein TolB
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_32_b1_sep16_scaffold_616_18
uncultured Latescibacteria bacterium, Latescibacteria, Bacteria

Not on your lists

comp(17684..18361)
DNA (678bp) protein (226aa)
Periplasmic protein TonB Tax=uncultured Latescibacteria bacterium RepID=Q2YZV9_9BACT
Periplasmic protein TonB {ECO:0000313|EMBL:CAI78813.1}; species="Bacteria; Latescibacteria; environmental samples.;" source="uncultured Latescibacteria bacterium.;"
TonB family protein
PLM4_32_b1_sep16_scaffold_616_19
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(18375..18779)
DNA (405bp) protein (135aa)
TolR protein Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKM6_THEYD
TolR protein
TolR protein {ECO:0000313|EMBL:ACI21831.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
PLM4_32_b1_sep16_scaffold_616_20
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18776..19552)
DNA (777bp) protein (259aa)
tolQ protein; K03562 biopolymer transport protein TolQ bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Uncharacterized protein {ECO:0000313|EMBL:ETX04436.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
tolQ; TolQ protein
PLM4_32_b1_sep16_scaffold_616_21
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19802..21343
DNA (1542bp) protein (514aa)
Uncharacterized protein Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5ZA21_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN08221.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii CL02T12C30.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_616_22
Sporothrix schenckii, Sporothrix, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

comp(21452..22162)
DNA (711bp) protein (237aa)
Beta 1,3 exoglucanase {ECO:0000313|EMBL:KJR86224.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; mitosporic Ophiostomataceae; Sporothrix.;" source="Sporothrix schenckii 1099-18.;"
cell wall surface anchor family protein
PLM4_32_b1_sep16_scaffold_616_23
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(22301..23008)
DNA (708bp) protein (236aa)
Beta-lactamase domain-containing protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XUK3_9BACT
beta-lactamase domain-containing protein
Tax=RBG_13_RIF03_48_7_curated
PLM4_32_b1_sep16_scaffold_616_24
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(23177..23497)
DNA (321bp) protein (107aa)
UPF0145 protein Dtur_0452 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E1X0_DICTD
hypothetical protein
Tax=RBG_13_Planctomycetes_60_9_curated
PLM4_32_b1_sep16_scaffold_616_25
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(23494..23928)
DNA (435bp) protein (145aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B50A6F
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_32_b1_sep16_scaffold_616_26
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

24711..26312
DNA (1602bp) protein (534aa)
peptidase M3 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI00039F36B6
oligoendopeptidase F
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_32_b1_sep16_scaffold_616_27
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(26333..27349)
DNA (1017bp) protein (339aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
Fructose-1,6-bisphosphatase class 1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I352_CALAS
fbp; fructose-1,6-bisphosphatase class I
PLM4_32_b1_sep16_scaffold_616_28
unknown

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comp(27431..27913)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_616_29
unknown

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comp(27934..28665)
DNA (732bp) protein (244aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_616_30
Ignavibacterium album, Ignavibacterium, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(28905..29588)
DNA (684bp) protein (228aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Ignavibacteriaceae; Ignavibacterium.;" source="Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 /; Mat9-16).;"
RNA-splicing ligase RtcB Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AJ03_IGNAJ
hypothetical protein
Displaying items 1-30 of 38 in total

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