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PLM4_32_b1_sep16_scaffold_791

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_791_1
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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1..549
DNA (549bp) protein (183aa)
Putative uncharacterized protein Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QVL4_CHLT3
Uncharacterized protein {ECO:0000313|EMBL:KER10138.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_791_2
uncultured Latescibacteria bacterium, Latescibacteria, Bacteria

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610..1602
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=uncultured Latescibacteria bacterium RepID=Q2Z0E0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAI78460.1}; species="Bacteria; Latescibacteria; environmental samples.;" source="uncultured Latescibacteria bacterium.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_791_3
MPI_Marinimicrobia_46_47, SAR406, SAR406, Marinimicrobia (Marine group A), Bacteria

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1678..2553
DNA (876bp) protein (292aa)
Tax=MPI_Marinimicrobia_46_47
PLM4_32_b1_sep16_scaffold_791_4
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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2550..3326
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MLQ8_9BACT
hypothetical protein
Tax=RBG_16_Zixibacteria_48_11_curated
PLM4_32_b1_sep16_scaffold_791_5
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3361..4287
DNA (927bp) protein (309aa)
Uncharacterized protein Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46FE3_METBF
hypothetical protein
E3 ubiquitin-protein ligase TRIM71 {ECO:0000313|EMBL:CDX03991.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
PLM4_32_b1_sep16_scaffold_791_6
uncultured Latescibacteria bacterium, Latescibacteria, Bacteria

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4304..9301
DNA (4998bp) protein (1666aa)
Uncharacterized protein Tax=uncultured Latescibacteria bacterium RepID=Q2Z0D6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAI78464.1}; species="Bacteria; Latescibacteria; environmental samples.;" source="uncultured Latescibacteria bacterium.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_791_7
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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9379..10920
DNA (1542bp) protein (514aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Histidine ammonia-lyase Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BFG9_MEISD
histidine ammonia-lyase
PLM4_32_b1_sep16_scaffold_791_8
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

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10936..12597
DNA (1662bp) protein (554aa)
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49] bin=RBG_19FT_COMBO_GAL15_69_19 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
urocanate hydratase (EC:4.2.1.49)
Tax=RBG_16_Actinobacteria_67_15_curated
PLM4_32_b1_sep16_scaffold_791_9
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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12618..13910
DNA (1293bp) protein (431aa)
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] bin=RBG_19FT_COMBO_GAL15_69_19 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
imidazolonepropionase
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM4_32_b1_sep16_scaffold_791_10
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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13900..15396
DNA (1497bp) protein (499aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_32_b1_sep16_scaffold_791_11
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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15509..17989
DNA (2481bp) protein (827aa)
Putative uncharacterized protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9V0R2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EGD40951.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
PLM4_32_b1_sep16_scaffold_791_12
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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17986..18588
DNA (603bp) protein (201aa)
Tax=CG_Deferri_01
PLM4_32_b1_sep16_scaffold_791_13
unknown

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18585..20408
DNA (1824bp) protein (608aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_791_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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21042..22094
DNA (1053bp) protein (351aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
type II secretion system protein E
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22084..22611
DNA (528bp) protein (176aa)
Type IV pilus biogenesis ATPase PilB Tax=Geobacter RepID=Q39VU7_GEOMG bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pilB2; type IV-A pilus assembly ATPase PilB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_16
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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22646..23668
DNA (1023bp) protein (341aa)
pilT-4; twitching motility pilus retraction protein; K02669 twitching motility protein PilT bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
pilT; twitching mobility protein
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_32_b1_sep16_scaffold_791_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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23706..24920
DNA (1215bp) protein (405aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pilC; type IV pilus assembly protein PilC
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_18
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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24933..26645
DNA (1713bp) protein (571aa)
PAS domain S-box protein (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H837_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Zixibacteria_48_11_curated
PLM4_32_b1_sep16_scaffold_791_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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26675..28081
DNA (1407bp) protein (469aa)
two component, sigma54 specific, Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
sigma-54 factor interaction domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_20
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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28314..28754
DNA (441bp) protein (147aa)
prokaryotic N-terminal methylation motif domain protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
pilA2; type IV pilin PilA
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_32_b1_sep16_scaffold_791_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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28888..29868
DNA (981bp) protein (327aa)
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
pilH; ABC transporter ATP-binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_32_b1_sep16_scaffold_791_22
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

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29871..30635
DNA (765bp) protein (255aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
putative ABC transporter permease
Tax=RBG_13_Aminicenantes_64_14_curated
PLM4_32_b1_sep16_scaffold_791_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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30635..31339
DNA (705bp) protein (235aa)
Putative uncharacterized protein Tax=Anaeromyxobacter RepID=B4UCT3_ANASK bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_24
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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31329..32114
DNA (786bp) protein (262aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme Tax=uncultured bacterium RepID=K1Z900_9BACT
prepilin peptidase
Tax=GWB2_Desulfobacterales_56_26_curated
PLM4_32_b1_sep16_scaffold_791_25
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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32368..33429
DNA (1062bp) protein (354aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
pilM; putative type IV pilus assembly protein PilM
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_32_b1_sep16_scaffold_791_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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33430..33990
DNA (561bp) protein (187aa)
Fimbrial assembly Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXA3_9PROT bin=16ft_combo_ws3_JS1 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Fimbrial assembly family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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34052..34729
DNA (678bp) protein (226aa)
pilus assembly protein, PilO; K02664 type IV pilus assembly protein PilO bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
pilus assembly protein PilO
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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34692..35189
DNA (498bp) protein (166aa)
pldB; lysophospholipase L2; K01048 lysophospholipase [EC:3.1.1.5] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Boreogadus saida genus=Boreogadus taxon_order=Gadiformes taxon_class=Actinopterygii phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_791_29
unknown

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comp(35405..35557)
DNA (153bp) protein (51aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_791_30
unknown

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comp(35557..35910)
DNA (354bp) protein (118aa)

This feature has no annotations

Displaying items 1-30 of 84 in total

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