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PLM4_32_b1_sep16_scaffold_938

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_938_1
RLO_PLX_64_10, Bacteria

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1..1125
DNA (1125bp) protein (375aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XVD3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_938_trna_1
unknown

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1173..1246
DNA (74bp)
transferRNA Pro
PLM4_32_b1_sep16_scaffold_938_2
unknown

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1417..1845
DNA (429bp) protein (143aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_938_3
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

1955..3073
DNA (1119bp) protein (373aa)
oligopeptide transporter OPT family bin=CNBR_ACIDO species=Teredinibacter turnerae genus=Teredinibacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
oligopeptide transporter OPT family
Tax=BJP_IG2069_Spirochaetales_48_31
PLM4_32_b1_sep16_scaffold_938_4

Not on your lists

3087..3893
DNA (807bp) protein (269aa)
Oligopeptide transporter, OPT family Tax=uncultured bacterium RepID=K1ZRY5_9BACT
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:EKD52447.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
oligopeptide transporter OPT family
PLM4_32_b1_sep16_scaffold_938_trna_2
unknown

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3994..4067
DNA (74bp)
transferRNA Arg
PLM4_32_b1_sep16_scaffold_938_5
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4139..5299
DNA (1161bp) protein (387aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW97492.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM4_32_b1_sep16_scaffold_938_6
unknown

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comp(5443..6018)
DNA (576bp) protein (192aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_938_7
Hippea maritima, Hippea, Desulfurellales, Deltaproteobacteria, Proteobacteria, Bacteria

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6240..6731
DNA (492bp) protein (164aa)
Transcription elongation factor GreA Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LWW0_HIPMA
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Hippea.;" source="Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2).;"
PLM4_32_b1_sep16_scaffold_938_8
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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6825..8300
DNA (1476bp) protein (492aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P291_AROAE
Uncharacterized protein {ECO:0000313|EMBL:KFB77921.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_938_9
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

8297..9334
DNA (1038bp) protein (346aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P291_AROAE
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
PLM4_32_b1_sep16_scaffold_938_10
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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9370..9621
DNA (252bp) protein (84aa)
Acyl carrier protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAU7_SINAD
acyl carrier protein
Acyl carrier protein {ECO:0000313|EMBL:AGA25975.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_32_b1_sep16_scaffold_938_11
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9638..11200
DNA (1563bp) protein (521aa)
Putative acyl-CoA synthetase Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P289_AROAE
Tyrocidine synthase I {ECO:0000313|EMBL:EXI79052.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
acyl-CoA synthetase
PLM4_32_b1_sep16_scaffold_938_12
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

11206..12351
DNA (1146bp) protein (382aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase Tax=Calothrix sp. PCC 7507 RepID=K9PQM0_9CYAN
Tax=RBG_13_Chloroflexi_68_17_curated
PLM4_32_b1_sep16_scaffold_938_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12399..13349)
DNA (951bp) protein (317aa)
putative oxidoreductase bin=bin5_DeltaP species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
putative oxidoreductase
Tax=RBG_16_Deltaproteobacteria_64_85_curated
PLM4_32_b1_sep16_scaffold_938_trna_3
unknown

Not on your lists

13477..13550
DNA (74bp)
transferRNA His
PLM4_32_b1_sep16_scaffold_938_14
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14093..14416
DNA (324bp) protein (108aa)
Cyclase/dehydrase bin=GWC2_Deltaproteobacteria_55_46 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
Tax=GWC2_Deltaproteobacteria_55_46b_curated
PLM4_32_b1_sep16_scaffold_938_15
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(14429..14839)
DNA (411bp) protein (137aa)
Stage II sporulation protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
anti-sigma-factor antagonist
Tax=BJP_IG2158_Zixibacteria_48_33
PLM4_32_b1_sep16_scaffold_938_16

Not on your lists

15029..15457
DNA (429bp) protein (143aa)
Marine sediment metagenome DNA, contig: S01H4_L02493 {ECO:0000313|EMBL:GAG70798.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Single-stranded DNA-binding protein bin=GWB2_Proteobacteria_55_19 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
ssb; single-stranded DNA-binding protein
PLM4_32_b1_sep16_scaffold_938_trna_4
unknown

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15474..15545
DNA (72bp)
transferRNA Lys
PLM4_32_b1_sep16_scaffold_938_17
unknown

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15892..16758
DNA (867bp) protein (289aa)
peptidase S9B dipeptidylpeptidase IV subunit
PLM4_32_b1_sep16_scaffold_938_18
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

16959..17963
DNA (1005bp) protein (335aa)
N-acetylmuramoyl-L-alanine amidase family protein Tax=Clostridium difficile CD160 RepID=T3D9N6_CLODI
Sporulation-specific N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDZ79547.1}; Flags: Precursor;; species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_938_19
unknown

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comp(17811..18362)
DNA (552bp) protein (184aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_938_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18970..20571)
DNA (1602bp) protein (534aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9G7B0_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN92802.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM4_32_b1_sep16_scaffold_938_21
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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comp(20550..21209)
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9G914_SORC5
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_32_b1_sep16_scaffold_938_22
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21582..23294
DNA (1713bp) protein (571aa)
hypothetical protein Tax=unclassified candidate division KSB1 RepID=UPI000364FB71
hypothetical protein
Tax=RBG_13_Planctomycetes_63_9_curated
PLM4_32_b1_sep16_scaffold_938_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(23402..25813)
DNA (2412bp) protein (804aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IK00_9PLAN bin=16ft_combo_ws3_JS1 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
5'-nucleotidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_938_24
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

26157..27404
DNA (1248bp) protein (416aa)
acaB2; acetyl-CoA C-acetyltransferase (EC:2.3.1.9)
Uncharacterized protein Tax=Thermoplasmatales archaeon E-plasma RepID=T0LR24_9EURY
Tax=RBG_16_Actinobacteria_67_15_curated
PLM4_32_b1_sep16_scaffold_938_25
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

27404..28432
DNA (1029bp) protein (343aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
PLM4_32_b1_sep16_scaffold_938_26

Not on your lists

28504..29208
DNA (705bp) protein (235aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI000370306D
Marine sediment metagenome DNA, contig: S01H1_L08340 {ECO:0000313|EMBL:GAF90444.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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