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PLM4_32_b1_sep16_scaffold_1035_21

Organism: PLM4_32_b1_sep16_Eisenbacteria_66_8

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 ASCG 12 / 38
Location: 24907..25788

Top 3 Functional Annotations

Value Algorithm Source
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Selenomonas sp. F0473 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin similarity UNIREF
DB: UNIREF100
  • Identity: 45.2
  • Coverage: 290.0
  • Bit_score: 233
  • Evalue 1.50e-58
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 44.4
  • Coverage: 288.0
  • Bit_score: 223
  • Evalue 7.60e-56
Tax=RBG_16_RIF_WS3X_71_46_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 45.2
  • Coverage: 290.0
  • Bit_score: 233
  • Evalue 2.10e-58

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Taxonomy

RBG_16_RIF_WS3X_71_46_curated → RIF-WS3X → Bacteria

Sequences

DNA sequence
Length: 882
ATGTCCGACGAACGCCTGAAGCCCGCACCCAAGGACGACGCGCGCGAGCCGTCGTACGACATCCAGGCGCGCTACCTCGCGGAGATCGGGCGCTACCATCTGCTGACCGCCGAGGAAGAAATCGAACTGGGCCGCCGGCTGGCCCAGGGCGACGACGAGGCTCGCCGCCATCTCATCAACTCCAACCTGCGCCTGGTCGTCACCATCGCGAAGCGCTACGCGCACCGCGGACAGACCCTCCTGGACCTGATCGAAGACGGCAACCTCGGCCTGATTCGCGCGGCCACGAAATTCGACTACACCAAGGGATTCCGTTTCAGCACCTACGCGTCGTACTGGATCAAGCAGTCGATCCGGCGCGGAGTTGCCAGCCAATCGCGGCCGCTTCGCATCCCGGTGCACATCTTTCACCTGATCAACCGGTACGTGAAGGCGGAGGAACGTCTGCGCACCCAGGGGAAGGCCACGGACGACGAGTCGATGGCGGCGGAGCTCGACGTGAGTGTGCGCCGGGTCAAGCTGGCGCGCACGCTCGTCGCCGGGATCCGCTCCGAGGATCCGCTCCAGAGCGCCGACGCGCTCCAGCAGCTGGCGTCGGACCCGTACCACCTCCACAACGGGTCGCCCGAGGCGCTGGTAACGCTGCAGCTCGAGAACAACGAAATCGCGGATCTGTTCGAGCGCTGCTTGAACCCGCGCGAGCAGCAAGTCCTCACCCTTCGCTACGGTCTGGCCGACGGGGAACCGAAGACGCTGGGCGAAGCGGGCCGCTCGGTGGGCGTGTCGCGAGAGCGCGTGCGTCAGATCGAAAAGCGCGCGCTCCAGAAGCTCAACATCGTGCTCTCGAGCAGCGGCCGCCCGGGTGGAGGCTCGCACGCATGA
PROTEIN sequence
Length: 294
MSDERLKPAPKDDAREPSYDIQARYLAEIGRYHLLTAEEEIELGRRLAQGDDEARRHLINSNLRLVVTIAKRYAHRGQTLLDLIEDGNLGLIRAATKFDYTKGFRFSTYASYWIKQSIRRGVASQSRPLRIPVHIFHLINRYVKAEERLRTQGKATDDESMAAELDVSVRRVKLARTLVAGIRSEDPLQSADALQQLASDPYHLHNGSPEALVTLQLENNEIADLFERCLNPREQQVLTLRYGLADGEPKTLGEAGRSVGVSRERVRQIEKRALQKLNIVLSSSGRPGGGSHA*