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PLM4_32_b1_sep16_scaffold_1035

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1035_1
candidate division Zixibacteria, Bacteria

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2..586
DNA (585bp) protein (195aa)
Tetratricopeptide repeat protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EQB63557.1}; species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_1035_2
unknown

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588..1583
DNA (996bp) protein (332aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1580..4192
DNA (2613bp) protein (871aa)
DNA mismatch repair protein MutS Tax=Anaeromyxobacter RepID=MUTS_ANAD2 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA mismatch repair protein MutS
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1035_4
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

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4336..6612
DNA (2277bp) protein (759aa)
Putative Nif-specific regulatory protein bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Signal transduction histidine kinase
Tax=CG_Delta_01
PLM4_32_b1_sep16_scaffold_1035_5
RLO_PLX_64_10, Bacteria

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6731..8575
DNA (1845bp) protein (615aa)
DNA mismatch repair protein MutL Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=MUTL_CHLP8
DNA mismatch repair protein MutL
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_32_b1_sep16_scaffold_1035_6
Jonquetella anthropi, Jonquetella, Synergistales, Synergistia, Synergistetes, Bacteria

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8596..9561
DNA (966bp) protein (322aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Jonquetella.;" source="Jonquetella anthropi E3_33 E1.;"
tRNA dimethylallyltransferase Tax=Jonquetella anthropi E3_33 E1 RepID=C9M530_9BACT
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
PLM4_32_b1_sep16_scaffold_1035_7
unknown

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comp(9591..9932)
DNA (342bp) protein (114aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_trna_1
unknown

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9612..9684
DNA (73bp)
transferRNA Gly
PLM4_32_b1_sep16_scaffold_1035_8
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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10403..11719
DNA (1317bp) protein (439aa)
Putative uncharacterized protein Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R7Q7_AMMDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX52336.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
PLM4_32_b1_sep16_scaffold_1035_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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11716..13116
DNA (1401bp) protein (467aa)
GTPase Der Tax=Moorella thermoacetica (strain ATCC 39073) RepID=DER_MOOTA
small GTP-binding protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_32_b1_sep16_scaffold_1035_10
S_OP1_64_32, KB1, Bacteria

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13113..13736
DNA (624bp) protein (208aa)
hypothetical protein Tax=Verrucomicrobium spinosum RepID=UPI00017448F9
membrane protein
Tax=S_OP1_64_32
PLM4_32_b1_sep16_scaffold_1035_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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13741..14778
DNA (1038bp) protein (346aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=GPDA_PELPB bin=16ft_combo_ws3_JS1 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1035_12
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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14775..15176
DNA (402bp) protein (134aa)
transcriptional regulator Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003AA2D4C
MerR family transcriptional regulator {ECO:0000313|EMBL:BAL54876.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
MerR family transcriptional regulator
PLM4_32_b1_sep16_scaffold_1035_trna_2
unknown

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15216..15289
DNA (74bp)
transferRNA Pro
PLM4_32_b1_sep16_scaffold_1035_13
unknown

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comp(15361..17703)
DNA (2343bp) protein (781aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(17913..18287)
DNA (375bp) protein (125aa)
5-methyltetrahydrofolate--homocysteine methyltransferase Tax=Reinekea blandensis MED297 RepID=A4BC32_9GAMM
methionine synthase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_1035_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(18265..21570)
DNA (3306bp) protein (1102aa)
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:BAH37601.1}; EC=2.1.1.13 {ECO:0000313|EMBL:BAH37601.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
metH; 5-methyltetrahydrofolate--homocysteine methyltransferase (EC:2.1.1.13)
5-methyltetrahydrofolate--homocysteine methyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5U1_GEMAT
PLM4_32_b1_sep16_scaffold_1035_16
CG_Omnitr_01, Omnitrophica, Bacteria

Not on your lists

21700..22326
DNA (627bp) protein (209aa)
putative acyltransferase (EC:2.3.1.-)
Similar to lipid A biosynthesis lauroyl acyltransferase bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=CG_Omnitr_01
PLM4_32_b1_sep16_scaffold_1035_17
unknown

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22293..22529
DNA (237bp) protein (79aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_18
candidate division Zixibacteria, Bacteria

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22522..23214
DNA (693bp) protein (231aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L7P3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EQB63597.1}; species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
dolichol-phosphate mannose synthase
PLM4_32_b1_sep16_scaffold_1035_19
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

23247..23996
DNA (750bp) protein (250aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] bin=bin7_NC10_sister species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
surE; 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)(survival protein, protein damage control) (EC:3.1.3.5)
PLM4_32_b1_sep16_scaffold_1035_20
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24029..24715
DNA (687bp) protein (229aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A824_THEID
PLM4_32_b1_sep16_scaffold_1035_trna_3
unknown

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24818..24892
DNA (75bp)
transferRNA Pro
PLM4_32_b1_sep16_scaffold_1035_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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24907..25788
DNA (882bp) protein (294aa)
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Selenomonas sp. F0473 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RNA polymerase, sigma 70 subunit, RpoD
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_32_b1_sep16_scaffold_1035_22
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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25785..26318
DNA (534bp) protein (178aa)
Adenine phosphoribosyltransferase Tax=Chthonomonas calidirosea T49 RepID=S0ET29_9BACT
adenine phosphoribosyltransferase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_32_b1_sep16_scaffold_1035_trna_4
unknown

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26369..26442
DNA (74bp)
transferRNA Arg
PLM4_32_b1_sep16_scaffold_1035_23

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comp(26680..27321)
DNA (642bp) protein (214aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B48653
Marine sediment metagenome DNA, contig: S06H3_S04010 {ECO:0000313|EMBL:GAI20742.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative phage integrase
PLM4_32_b1_sep16_scaffold_1035_24
unknown

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comp(27461..27622)
DNA (162bp) protein (54aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_25
unknown

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comp(27619..28278)
DNA (660bp) protein (220aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1035_26
RBG_16_OP11_45_19_curated, Microgenomates, Bacteria

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comp(28275..28721)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Acinetobacter baumannii RepID=D0CBF1_ACIBA
Tax=RBG_16_OP11_45_19_curated
Displaying items 1-30 of 69 in total

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