ggKbase home page

PLM4_32_b1_sep16_scaffold_1232

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1232_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1..969
DNA (969bp) protein (323aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
Threonine dehydratase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1232_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(983..2059)
DNA (1077bp) protein (359aa)
Patatin bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2056..3252)
DNA (1197bp) protein (399aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 bin=GWF2_Methylomirabilis_70_14 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-ACP synthase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3275..4060)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/carnithine racemase Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KEG6_9FIRM
enoyl-CoA hydratase/carnithine racemase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_1232_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4060..4755)
DNA (696bp) protein (232aa)
Major facilitator superfamily transporter bin=GWC2_Methylomirabilis_70_24 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transporter
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4770..5585
DNA (816bp) protein (272aa)
Photosystem I assembly BtpA bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
photosystem I assembly BtpA
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1232_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5648..6760
DNA (1113bp) protein (371aa)
Beta-N-acetylhexosaminidase bin=GWC2_Methylomirabilis_70_24 species=Prosthecochloris vibrioformis genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative beta-N-acetylhexosaminidase
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_1232_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6847..7773)
DNA (927bp) protein (309aa)
rbsK; ribokinase (EC:2.7.1.15)
Ribokinase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7755..8735)
DNA (981bp) protein (327aa)
Inosine-uridine preferring nucleoside hydrolase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
inosine-uridine preferring nucleoside hydrolase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8865..9035
DNA (171bp) protein (57aa)
id=4895018 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1232_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9025..10296)
DNA (1272bp) protein (424aa)
Acetyl-CoA hydrolase/transferase bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetyl-CoA hydrolase/transferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10524..10685
DNA (162bp) protein (54aa)
Endoribonuclease L-PSP bin=GWC2_Methylomirabilis_70_16 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
endoribonuclease L-PSP
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10867..11208
DNA (342bp) protein (114aa)
hypothetical protein Tax=Dyella japonica RepID=UPI0002E17C64
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1232_14
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11250..11987
DNA (738bp) protein (246aa)
bifunctional pyrazinamidase/nicotinamidase Tax=Bradyrhizobium japonicum RepID=UPI0003663FEA
Pyrazinamidase/nicotinamidase {ECO:0000313|EMBL:AHY55659.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
grpE; bifunctional pyrazinamidase/nicotinamidase
PLM4_32_b1_sep16_scaffold_1232_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11992..12456
DNA (465bp) protein (155aa)
id=14627948 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_1232_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12453..13802
DNA (1350bp) protein (450aa)
Phospholipid/glycerol acyltransferase bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1232_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14145..14660
DNA (516bp) protein (172aa)
creatininase family protein; K01470 creatinine amidohydrolase [EC:3.5.2.10] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_1232_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14657..14902
DNA (246bp) protein (82aa)
Transcriptional regulator, AsnC family bin=GWC2_Methylomirabilis_70_16 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1232_19
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14939..16387)
DNA (1449bp) protein (483aa)
HTTM domain protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SLD0_RHOMR
HTTM domain-containing protein
HTTM domain protein {ECO:0000313|EMBL:AEN74647.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_32_b1_sep16_scaffold_1232_20
unknown

Not on your lists

comp(16416..16961)
DNA (546bp) protein (182aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1232_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17113..18111
DNA (999bp) protein (333aa)
magnesium and cobalt transport protein CorA; K03284 magnesium transporter bin=bin7_NC10_sister species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
magnesium and cobalt transport protein CorA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_1232_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18128..19096
DNA (969bp) protein (323aa)
Nucleoside-diphosphate-sugar epimerase bin=GWF2_Methylomirabilis_70_14 species=Leptolyngbya sp. PCC 7375 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 22 items

View Taxonomy