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PLM4_32_b1_sep16_scaffold_1830

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1830_1
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..940
DNA (939bp) protein (313aa)
UPI0003CEB114 related cluster Tax=unknown RepID=UPI0003CEB114
Transposase {ECO:0000313|EMBL:CDX42730.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
transposase
PLM4_32_b1_sep16_scaffold_1830_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(990..1748)
DNA (759bp) protein (253aa)
Arabinose efflux permease family protein bin=GWC2_Methylomirabilis_70_24 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
major Facilitator Superfamily protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1830_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(1745..2023)
DNA (279bp) protein (93aa)
Arabinose efflux permease family protein bin=GWC2_Methylomirabilis_70_24 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative transporter, MFS-type
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1830_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2010..3266)
DNA (1257bp) protein (419aa)
Putative two-component hybrid sensor and regulator bin=GWC2_Methylomirabilis_70_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(3266..6073)
DNA (2808bp) protein (936aa)
Excinuclease ABC, subunit A bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
uvrA; excinuclease ABC subunit A
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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6201..6692
DNA (492bp) protein (164aa)
ferric uptake regulator, Fur family; K09825 Fur family transcriptional regulator, peroxide stress response regulator bin=bin7_NC10_sister species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ferric-uptake regulator
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM4_32_b1_sep16_scaffold_1830_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6751..7200
DNA (450bp) protein (150aa)
Rubrerythrin bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbr; rubrerythrin
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1830_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7294..9048
DNA (1755bp) protein (585aa)
glpC; ferredoxin bin=bin7_NC10_sister species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative fe-S oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_1830_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(9073..9774)
DNA (702bp) protein (234aa)
PF06181 domain protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_10
Solea senegalensis, Solea, Pleuronectiformes, Neopterygii, Chordata, Metazoa

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comp(9831..10070)
DNA (240bp) protein (80aa)
Calsequestrin Tax=Solea senegalensis RepID=C6L838_SOLSE
Calsequestrin {ECO:0000256|RuleBase:RU000648}; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea.;" source="Solea senegalensis (Senegalese sole).;"
aspartic acid-rich protein aspolin2-1-like protein
PLM4_32_b1_sep16_scaffold_1830_11
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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10425..11099
DNA (675bp) protein (225aa)
Uncharacterized protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KQB2_RHISN
Protein of unknown function DUF4242
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_32_b1_sep16_scaffold_1830_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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11096..11518
DNA (423bp) protein (141aa)
histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] bin=bin7_NC10_sister species=Mesorhizobium amorphae genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_1830_trna_1
unknown

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11604..11676
DNA (73bp)
transferRNA Met
PLM4_32_b1_sep16_scaffold_1830_13
unknown

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11896..12078
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1830_14
unknown

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comp(12621..12764)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_1830_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12982..13767
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/isomerase bin=GWF2_Methylomirabilis_70_14 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase/isomerase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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13981..14865
DNA (885bp) protein (295aa)
Glycosyl transferase group 1 bin=GWC2_Methylomirabilis_70_16 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
group 1 glycosyl transferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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14873..15274
DNA (402bp) protein (134aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative 6-pyruvoyl tetrahydropterin synthase
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_1830_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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15271..15705
DNA (435bp) protein (145aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase bin=GWF2_Methylomirabilis_70_14 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative 6-pyruvoyl tetrahydropterin synthase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1830_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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15702..16214
DNA (513bp) protein (171aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
folE; GTP cyclohydrolase I
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_1830_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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16211..16927
DNA (717bp) protein (239aa)
Oxidoreductase, short chain dehydrogenase/reductase family bin=GWC2_Methylomirabilis_70_16 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short chain dehydrogenase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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17024..17350
DNA (327bp) protein (109aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17379..18059
DNA (681bp) protein (227aa)
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
molybdopterin converting factor-like protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18100..19434
DNA (1335bp) protein (445aa)
tRNA(Ile)-lysidine synthase bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tRNA(Ile)-lysidine synthetase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19480..20952
DNA (1473bp) protein (491aa)
Periplasmic trypsin-like serine protease lipoprotein DegQ bin=GWC2_Methylomirabilis_70_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1830_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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21050..22177
DNA (1128bp) protein (376aa)
Response regulator bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1830_26
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(22015..22602)
DNA (588bp) protein (196aa)
Putative Phage integrase Tax=Candidatus Nitrospira defluvii RepID=D8P8R6_9BACT
putative phage integrase
Putative Phage integrase {ECO:0000313|EMBL:CBK43898.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying 27 items

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