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PLM4_32_b1_sep16_scaffold_2056

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2056_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1..693
DNA (693bp) protein (231aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2056_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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742..1437
DNA (696bp) protein (232aa)
50S ribosomal protein L25 bin=GWC2_Methylomirabilis_70_24 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplY; 50S ribosomal protein L25
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1438..1980
DNA (543bp) protein (181aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1994..3520
DNA (1527bp) protein (509aa)
MutS2 protein bin=GWC2_Methylomirabilis_70_24 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
MutS2 family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_5
Sporothrix schenckii, Sporothrix, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

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comp(3474..4409)
DNA (936bp) protein (312aa)
Uncharacterized protein Tax=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) RepID=U7PS25_SPOS1
Uncharacterized protein {ECO:0000313|EMBL:ERS98377.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; mitosporic Ophiostomataceae; Sporothrix.;" source="Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183); (Rose-picker's disease fungus).;"
PLM4_32_b1_sep16_scaffold_2056_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4446..6371
DNA (1926bp) protein (642aa)
DNA primase bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA primase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6396..8213
DNA (1818bp) protein (606aa)
RNA polymerase sigma factor RpoD bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoD; RNA polymerase sigma factor RpoD
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_trna_1
unknown

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8237..8309
DNA (73bp)
transferRNA Met
PLM4_32_b1_sep16_scaffold_2056_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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8423..9130
DNA (708bp) protein (236aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2056_9
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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9228..9674
DNA (447bp) protein (149aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
Ribonuclease H Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5L6_DESAP
ribonuclease H
PLM4_32_b1_sep16_scaffold_2056_10
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9804..10640)
DNA (837bp) protein (279aa)
fabG2; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
short-chain dehydrogenase Tax=alpha proteobacterium SCGC AAA536-K22 RepID=UPI0003B4FAD3
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EON20490.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
PLM4_32_b1_sep16_scaffold_2056_11
unknown

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comp(10643..10753)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_2056_12
unknown

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10935..11210
DNA (276bp) protein (92aa)

This feature has no annotations

Displaying 13 items

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