ggKbase home page

PLM4_32_b1_sep16_scaffold_2547

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2547_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3..254
DNA (252bp) protein (84aa)
id=4614295 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_2547_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

359..1342
DNA (984bp) protein (328aa)
Galactose-1-phosphate uridylyltransferase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
galactose-1-phosphate uridylyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2547_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1505..1945
DNA (441bp) protein (147aa)
Putative Transcription factor IscR bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transcription factor IscR
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2547_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1965..3191
DNA (1227bp) protein (409aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2547_5
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3226..3642
DNA (417bp) protein (139aa)
scaffold protein bin=GWC2_Methylomirabilis_70_16 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nitrogen fixation protein, NifU-like protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_32_b1_sep16_scaffold_2547_6
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3664..3990
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly protein IscA bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
iron-sulfur cluster insertion protein
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_32_b1_sep16_scaffold_2547_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4055..4651
DNA (597bp) protein (199aa)
Co-chaperone protein HscB (Hsc20) bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hscB; co-chaperone protein HscB
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2547_8
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

4629..6455
DNA (1827bp) protein (609aa)
Chaperone protein HscA (Hsc66) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hscA; chaperone protein HscA
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_32_b1_sep16_scaffold_2547_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6455..6778
DNA (324bp) protein (108aa)
2Fe-2S ferredoxin bin=GWC2_Methylomirabilis_70_24 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_32_b1_sep16_scaffold_2547_10
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6826..7026
DNA (201bp) protein (67aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscX; iron-sulfur cluster assembly protein IscX
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_32_b1_sep16_scaffold_2547_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7028..7237)
DNA (210bp) protein (70aa)
id=4806443 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2547_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7234..7527)
DNA (294bp) protein (98aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2547_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7529..7864)
DNA (336bp) protein (112aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2547_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7883..9037
DNA (1155bp) protein (385aa)
Cysteine desulfurase bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysteine desulfurase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2547_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9056..9448
DNA (393bp) protein (131aa)
FeS cluster assembly scaffold protein NifU bin=GWC2_Methylomirabilis_70_24 species=Thermanaerovibrio acidaminovorans genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Iron-sulfur cluster assembly scaffold protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2547_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9441..10115
DNA (675bp) protein (225aa)
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2547_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10143..10319
DNA (177bp) protein (59aa)
Excisionase/Xis, DNA-binding protein bin=GWC2_Methylomirabilis_70_16 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA binding domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 17 items

View Taxonomy