ggKbase home page

PLM4_32_b1_sep16_scaffold_506

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_506_1
unknown

Not on your lists

comp(194..526)
DNA (333bp) protein (111aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_506_2
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(602..1234)
DNA (633bp) protein (211aa)
ECF subfamily RNA polymerase sigma factor Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJH6_MYXFH
ECF subfamily RNA polymerase sigma factor
ECF subfamily RNA polymerase sigma factor {ECO:0000313|EMBL:AEI62689.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM4_32_b1_sep16_scaffold_506_3
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(1231..2250)
DNA (1020bp) protein (340aa)
hypothetical protein Tax=Orenia marismortui RepID=UPI00035FA49D
putative S1 family peptidase
Tax=RBG_16_Actinobacteria_67_10_curated
PLM4_32_b1_sep16_scaffold_506_4
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2375..3859)
DNA (1485bp) protein (495aa)
Multicopper oxidase domain-containing protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U0Q5_MYXSD
Multicopper oxidase {ECO:0000313|EMBL:KIG16560.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
multicopper oxidase domain-containing protein
PLM4_32_b1_sep16_scaffold_506_5
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3849..5264)
DNA (1416bp) protein (472aa)
Similar to outermembrane (Copper) efflux protein bin=GWF2_Lentisphaerae_50_93 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
outer membrane efflux protein
Tax=GWF2_Lentisphaerae_50_93_curated
PLM4_32_b1_sep16_scaffold_506_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5285..5749)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Salipiger mucosus DSM 16094 RepID=S9QW77_9RHOB
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_32_b1_sep16_scaffold_506_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5749..6546)
DNA (798bp) protein (266aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_506_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7099..8877)
DNA (1779bp) protein (593aa)
glutaconate CoA-transferase (EC:2.8.3.12)
Probable glutaconate CoA-transferase bin=GWC2_Methylomirabilis_70_24 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8874..9284)
DNA (411bp) protein (137aa)
Uncharacterized conserved protein bin=GWC2_Methylomirabilis_70_24 species=Arthrobacter sp. SJCon genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(9281..11269)
DNA (1989bp) protein (663aa)
hypothetical protein bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Fe-S oxidoreductase
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_506_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11315..12280)
DNA (966bp) protein (322aa)
LAO/AO transport system ATPase bin=GWF2_Methylomirabilis_70_14 species=uncultured marine microorganism HF4000_APKG10K24 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
argK; Lysine/arginine/ornithine (LAO/AO) transport system ATPase (argK)
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12295..12801)
DNA (507bp) protein (169aa)
Ribosomal-protein-alanine acetyltransferase bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ribosomal-protein-alanine acetyltransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(12794..13477)
DNA (684bp) protein (228aa)
Peptidase M22, glycoprotease bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13579..14226
DNA (648bp) protein (216aa)
Orotate phosphoribosyltransferase (OPRT) (OPRTase) (EC:2.4.2.10)
Putative Orotate phosphoribosyltransferase (OPRT) (OPRTase) bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14524..15399
DNA (876bp) protein (292aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_506_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15455..15961)
DNA (507bp) protein (169aa)
Transcriptional repressor NrdR bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nrdR; transcriptional regulator NrdR
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_32_b1_sep16_scaffold_506_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15958..17112)
DNA (1155bp) protein (385aa)
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17109..17573)
DNA (465bp) protein (155aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6)
Ribose 5-phosphate isomerase B bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(17606..18838)
DNA (1233bp) protein (411aa)
Major facilitator superfamily MFS_1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFT3_9BACT
Major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CBE68614.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_32_b1_sep16_scaffold_506_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18835..20130)
DNA (1296bp) protein (432aa)
acyltransferase domain-containing protein bin=bin7_NC10_sister species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyltransferase domain-containing protein
Tax=CSP1_6_Rokubacteria
PLM4_32_b1_sep16_scaffold_506_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20214..21578)
DNA (1365bp) protein (455aa)
Beta-lactamase-like protein bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_506_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(21586..22059)
DNA (474bp) protein (158aa)
Probable tRNA sulfurtransferase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative thiamine biosynthesis protein ThiI
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 22 items

View Taxonomy