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PLM4_32_b1_sep16_scaffold_683

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_683_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1..912
DNA (912bp) protein (304aa)
Phosphomethylpyrimidine synthase bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiC; thiamine biosynthesis protein ThiC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_683_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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915..2348
DNA (1434bp) protein (478aa)
Amidase bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_683_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2451..3482)
DNA (1032bp) protein (344aa)
2-dehydropantoate 2-reductase bin=GWC2_Methylomirabilis_70_16 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(3479..4054)
DNA (576bp) protein (192aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQU9_9FIRM
Tax=RBG_16_NC10_65_8_curated
PLM4_32_b1_sep16_scaffold_683_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(4061..5488)
DNA (1428bp) protein (476aa)
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gnfM; nitrogen fixation master sigma-54-dependent transcriptional response regulator
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_683_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(5501..6586)
DNA (1086bp) protein (362aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB bin=GWF2_Methylomirabilis_70_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_683_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(6583..7584)
DNA (1002bp) protein (334aa)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
O-sialoglycoprotein endopeptidase
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(7595..8464)
DNA (870bp) protein (290aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(8483..9766)
DNA (1284bp) protein (428aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
Carboxy-terminal-processing protease (C-terminal-processing protease) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_683_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(9786..11033)
DNA (1248bp) protein (416aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(11030..11914)
DNA (885bp) protein (295aa)
Putative Cell division protein FtsX bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Cell division protein FtsX
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12000..12671)
DNA (672bp) protein (224aa)
Cell division ATP-binding protein FtsE bin=GWC2_Methylomirabilis_70_24 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division ATP-binding protein FtsE
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_683_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12687..14156)
DNA (1470bp) protein (490aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_683_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14153..14455)
DNA (303bp) protein (101aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 14 items

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