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PLM4_32_b1_sep16_scaffold_788

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_788_1
unknown

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comp(2..79)
DNA (78bp) protein (26aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_788_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(83..247)
DNA (165bp) protein (55aa)
Uncharacterized protein Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DSG1_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:ERP45007.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens NCIMB 11764.;"
hypothetical protein
PLM4_32_b1_sep16_scaffold_788_3
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(300..896)
DNA (597bp) protein (199aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00030BB825
phosphohistidine phosphatase SixA
Tax=RBG_16_Spirochaete_67_19_curated
PLM4_32_b1_sep16_scaffold_788_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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989..1969
DNA (981bp) protein (327aa)
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45)
Serine-glyoxylate aminotransferase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_788_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1966..2073
DNA (108bp) protein (36aa)
Serine-glyoxylate aminotransferase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_788_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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2079..2696
DNA (618bp) protein (206aa)
Phosphoglycerate mutase bin=GWF2_Methylomirabilis_70_14 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha-ribazole phosphatase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_788_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2704..4038
DNA (1335bp) protein (445aa)
ATP phosphoribosyltransferase regulatory subunit bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hisZ; ATP phosphoribosyltransferase regulatory subunit
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_788_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4031..5362
DNA (1332bp) protein (444aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase bin=GWC2_Methylomirabilis_70_16 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_788_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5378..6736
DNA (1359bp) protein (453aa)
response regulator in two-component regulatory system, sigma 54-dependent bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
response regulator in two-component regulatory system, sigma 54-dependent
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_788_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6738..8546
DNA (1809bp) protein (603aa)
Multi-sensor signal transduction histidine kinase (EC:2.7.3.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_788_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

8543..9088
DNA (546bp) protein (182aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_32_b1_sep16_scaffold_788_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9117..9650
DNA (534bp) protein (178aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_32_b1_sep16_scaffold_788_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9808..10614
DNA (807bp) protein (269aa)
Beta-phosphoglucomutase hydrolase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-phosphoglucomutase family hydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_788_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10611..12866
DNA (2256bp) protein (752aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha,alpha-trehalose-phosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_32_b1_sep16_scaffold_788_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12918..13553)
DNA (636bp) protein (212aa)
OmpA/MotB domain protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_788_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(13804..15255)
DNA (1452bp) protein (484aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF03_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68332.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_32_b1_sep16_scaffold_788_17
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

15540..15968
DNA (429bp) protein (143aa)
Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML70_9BACT
atoC; acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme)
Tax=RBG_16_NC10_65_8_curated
PLM4_32_b1_sep16_scaffold_788_18
unknown

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15965..16096
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_788_19
unknown

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16237..16521
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_788_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16594..17445
DNA (852bp) protein (284aa)
Phosphogluconate dehydrogenase, NAD-binding bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative NAD(P)-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_32_b1_sep16_scaffold_788_21
Enterococcus moraviensis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17566..18345
DNA (780bp) protein (260aa)
Uncharacterized protein Tax=Enterococcus moraviensis ATCC BAA-383 RepID=R2T684_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOI00499.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus moraviensis ATCC BAA-383.;"
putative transcriptional regulator protein, AraC family
PLM4_32_b1_sep16_scaffold_788_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18437..19447
DNA (1011bp) protein (337aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_788_23
R_NC10_66_22, NC10, Bacteria

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19673..20050
DNA (378bp) protein (126aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 23 items

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