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PLM4_32_b1_sep16_scaffold_1916

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1916_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2..457
DNA (456bp) protein (152aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X3_GEMAT
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_32_b1_sep16_scaffold_1916_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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545..1786
DNA (1242bp) protein (414aa)
folC; folylpolyglutamate synthase (EC:6.3.2.17)
Folylpolyglutamate synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X2_GEMAT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_3

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1802..3046
DNA (1245bp) protein (415aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000380A468
Uncharacterized protein {ECO:0000313|EMBL:KKM61377.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NHL repeat-containing protein
PLM4_32_b1_sep16_scaffold_1916_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3203..5596
DNA (2394bp) protein (798aa)
Proline--tRNA ligase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X0_GEMAT
Prolyl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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5596..6936
DNA (1341bp) protein (447aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
diaminopimelate decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_32_b1_sep16_scaffold_1916_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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6933..8441
DNA (1509bp) protein (503aa)
GMP synthase [glutamine-hydrolyzing] Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=GUAA_GEMAT
GMP synthase [glutamine-hydrolyzing]
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(8449..8901)
DNA (453bp) protein (151aa)
Phosphotransferase system enzyme IIA component Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3V8_GEMAT
fruA; phosphotransferase system enzyme IIA component
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_32_b1_sep16_scaffold_1916_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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8911..9966
DNA (1056bp) protein (352aa)
tRNA-dihydrouridine synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3V7_GEMAT
TIM-barrel protein, nifR3 family
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9963..10730
DNA (768bp) protein (256aa)
Circadian phase modifier CpmA homolog Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8G3_ACIC5
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_10
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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10730..11650
DNA (921bp) protein (307aa)
Mg2 transporter protein CorA family protein bin=GWB1_Deltaproteobacteria_rel_55_8 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Mg2 transporter protein CorA family protein
Tax=GWB1_Bdellovibrionales_55_8_curated
PLM4_32_b1_sep16_scaffold_1916_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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11647..13062
DNA (1416bp) protein (472aa)
Diguanylate cyclase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC47_CONWI
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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13059..14327
DNA (1269bp) protein (423aa)
Putative dipeptidase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3I6_GEMAT
putative dipeptidase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_32_b1_sep16_scaffold_1916_13
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(14457..16601)
DNA (2145bp) protein (715aa)
Peptidase S9 prolyl oligopeptidase active site domain-containing protein bin=GWC2_Ignavibacteria_56_12 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM4_32_b1_sep16_scaffold_1916_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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17434..19005
DNA (1572bp) protein (524aa)
Tetratricopeptide repeat family Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S464_SALRD
TPR repeat-containing protein
TPR repeat-containing protein {ECO:0000313|EMBL:AHG93673.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_32_b1_sep16_scaffold_1916_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19002..20129)
DNA (1128bp) protein (376aa)
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
PLM4_32_b1_sep16_scaffold_1916_16
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20126..20626)
DNA (501bp) protein (167aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VU31_POLNA
PLM4_32_b1_sep16_scaffold_1916_17
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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20854..23892
DNA (3039bp) protein (1013aa)
Diguanylate cyclase/phosphodiesterase with GAF sensor Tax=Thiorhodococcus drewsii AZ1 RepID=G2E6B5_9GAMM
Diguanylate cyclase/phosphodiesterase with GAF sensor {ECO:0000313|EMBL:EGV28373.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
diguanylate cyclase/phosphodiesterase
PLM4_32_b1_sep16_scaffold_1916_18
Setaria italica, Setaria, Poales, commelinids, Streptophyta, Viridiplantae

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comp(23800..26268)
DNA (2469bp) protein (823aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
PREDICTED: LOW QUALITY PROTEIN: pyruvate, phosphate dikinase, chloroplastic-like Tax=Pantholops hodgsonii RepID=UPI0003C1385D
Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021225m}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Paniceae; Setaria.;" source="Setaria italica (Foxtail millet) (Panicum italicum).;"
PLM4_32_b1_sep16_scaffold_1916_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(26265..27191)
DNA (927bp) protein (309aa)
Amidophosphoribosyltransferase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E710_GEOLS bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
amidophosphoribosyltransferase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying 19 items

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