ggKbase home page

PLM4_32_b1_sep16_scaffold_2287

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2287_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

3..425
DNA (423bp) protein (141aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-) bin=CNBR_ACIDO species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_32_b1_sep16_scaffold_2287_2
unknown

Not on your lists

comp(868..1197)
DNA (330bp) protein (110aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_2287_3
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(1699..2445)
DNA (747bp) protein (249aa)
major facilitator superfamily protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
major facilitator superfamily MFS_1
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_32_b1_sep16_scaffold_2287_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2696..2998
DNA (303bp) protein (101aa)
Transcriptional regulator, AsnC family Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VXC4_DYAFD
AsnC family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2995..3888
DNA (894bp) protein (298aa)
ial:IALB_2604 DMT superfamily drug/metabolite permease bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
DMT superfamily drug/metabolite permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3944..5161)
DNA (1218bp) protein (406aa)
GAF domain-containing protein Tax=uncultured Chloroflexi bacterium RepID=H5SER7_9CHLR
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_32_b1_sep16_scaffold_2287_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

5205..5747
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Bacillus sp. 1NLA3E RepID=N0AYB7_9BACI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

5812..7293
DNA (1482bp) protein (494aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] bin=CNBR_ACIDO species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7119..8147)
DNA (1029bp) protein (343aa)
fliA1; RNA polymerase sigma factor for flagellar operon; K02405 RNA polymerase sigma factor for flagellar operon FliA bin=CNBR_ACIDO species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA polymerase sigma-D factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(8499..8690)
DNA (192bp) protein (64aa)
id=12554721 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(8721..8915)
DNA (195bp) protein (65aa)
id=12554722 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

9026..10378
DNA (1353bp) protein (451aa)
Fis family two component sigma-54 specific transcriptional regulator bin=CNBR_ACIDO species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(10383..11057)
DNA (675bp) protein (225aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative 6-phosphogluconolactonase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_2287_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

11080..11574
DNA (495bp) protein (165aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying 14 items

View Taxonomy