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PLM4_32_b1_sep16_scaffold_6178

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_6178_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..278)
DNA (276bp) protein (92aa)
cupin domain-containing protein bin=CNBR_ACIDO species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cupin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(275..1999)
DNA (1725bp) protein (575aa)
phosphoenolpyruvate-protein phosphotransferase PtsI bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoenolpyruvate-protein phosphotransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(1987..2265)
DNA (279bp) protein (93aa)
phosphocarrier protein HPr
Phosphotransferase system, phosphocarrier protein HPr bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2262..2519)
DNA (258bp) protein (86aa)
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphotransferase system, mannose-type, protein IIA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2516..2677)
DNA (162bp) protein (54aa)
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2674..3567)
DNA (894bp) protein (298aa)
putative P-loop-containing kinase; K06958 UPF0042 nucleotide-binding protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3564..4586)
DNA (1023bp) protein (341aa)
HPr kinase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] bin=CNBR_ACIDO species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
HPr kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4591..6021)
DNA (1431bp) protein (477aa)
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA polymerase sigma54 factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6037..6765)
DNA (729bp) protein (243aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_32_b1_sep16_scaffold_6178_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6765..7376)
DNA (612bp) protein (204aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying 10 items

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