ggKbase home page

PLM4_65_coex_sep16_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_85_1
GWC2_OD1_45_8, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

302..439
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU12796.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWC2_45_8.;"
Putative uncharacterized protein bin=GWE2_Gammaproteobacteria_37_16 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=GWE2_Gammaproteobacteria_37_16 organism_group=Gammaproteobacteria organism_desc=Looks good, but small
PLM4_65_coex_sep16_scaffold_85_2
unknown

Not on your lists

432..848
DNA (417bp) protein (139aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_85_3
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

1218..1757
DNA (540bp) protein (180aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_50_93 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_85_4
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(1779..2723)
DNA (945bp) protein (315aa)
Putative 4-hydroxy-2-oxovalerate aldolase bin=GWC2_Planctomycetes_45_44 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
putative 4-hydroxy-2-oxovalerate aldolase
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_85_5
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(2837..3934)
DNA (1098bp) protein (366aa)
3-dehydroquinate synthase bin=GWC2_Planctomycetes_45_44 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
3-dehydroquinate synthase
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_85_6
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4598..6433)
DNA (1836bp) protein (612aa)
BNR/Asp-box repeat protein bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
BNR/Asp-box repeat-containing protein
Tax=CG_Ignavi_02
PLM4_65_coex_sep16_scaffold_85_7
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6456..7415)
DNA (960bp) protein (320aa)
Beta-lactamase domain protein bin=GWF2_Bacteroidetes_33_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
beta-lactamase domain-containing protein
Tax=RBG_13_Bacteroidetes_42_15_curated
PLM4_65_coex_sep16_scaffold_85_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7736..8557)
DNA (822bp) protein (274aa)
hypothetical protein Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036C4793
Uncharacterized protein {ECO:0000313|EMBL:EEF60119.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
N-terminal cleavage protein
PLM4_65_coex_sep16_scaffold_85_9
RBG_13_Planctomycetes_50_24_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

8618..10336
DNA (1719bp) protein (573aa)
aroD_aroE; 3-dehydroquinate dehydratase/shikimate dehydrogenase (EC:1.1.1.25 4.2.1.10)
Similar to 3-dehydroquinate dehydratase / shikimate 5-dehydrogenase bin=GWF2_Planctomycete_41_51 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
Tax=RBG_13_Planctomycetes_50_24_curated
PLM4_65_coex_sep16_scaffold_85_10
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10406..10867
DNA (462bp) protein (154aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00036F1E88
Uncharacterized protein {ECO:0000313|EMBL:AKE64436.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa NIES-2549.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_85_11
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10857..11054
DNA (198bp) protein (66aa)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI0003770D1B
Tax=RBG_13_Planctomycetes_63_9_curated
PLM4_65_coex_sep16_scaffold_85_12
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

11159..12019
DNA (861bp) protein (287aa)
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_coex_sep16_scaffold_85_13
GWF2_Planctomycetes_50_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

12154..12474
DNA (321bp) protein (107aa)
Putative uncharacterized protein bin=GWF2_Planctomycetes_50_10 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
DNA polymerase subunit beta
Tax=GWF2_Planctomycetes_50_10_curated
PLM4_65_coex_sep16_scaffold_85_14
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

12698..13018
DNA (321bp) protein (107aa)
Putative nucleotidyltransferase Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GIE2_9CYAN
DNA polymerase beta domain-containing protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_85_15
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

12999..13385
DNA (387bp) protein (129aa)
HEPN domain protein bin=GWA2_Elusimicrobia_56_46 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
HEPN domain-containing protein
Tax=RBG_16_Caldithrix_48_16_curated
PLM4_65_coex_sep16_scaffold_85_16
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

13406..14635
DNA (1230bp) protein (410aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase bin=GWF2_Planctomycetes_50_10 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_coex_sep16_scaffold_85_17
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

14739..15995
DNA (1257bp) protein (419aa)
Peptidase A24 family protein bin=GWC2_Planctomycetes_45_44 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
peptidase A24 family protein
Tax=RBG_13_Planctomycetes_44_8b_curated
PLM4_65_coex_sep16_scaffold_85_18
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

16034..16693
DNA (660bp) protein (220aa)
Similar to flagellar motor protein B bin=GWC2_Planctomycetes_45_44 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
OmpA/MotB domain-containing protein
Tax=RBG_13_Planctomycetes_44_8b_curated
PLM4_65_coex_sep16_scaffold_85_19
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(16740..19286)
DNA (2547bp) protein (849aa)
DNA internalization-related competence protein ComEC/Rec2 bin=GWF2_Planctomycetes_50_10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
putative hydrolase
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_85_20
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(19557..19973)
DNA (417bp) protein (139aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=Geobacter sp. (strain M21) RepID=C6E2E3_GEOSM
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_85_21
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(19999..21267)
DNA (1269bp) protein (423aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase bin=GWF2_Planctomycetes_42_9 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_85_22
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(21342..22652)
DNA (1311bp) protein (437aa)
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 bin=GWC2_Planctomycetes_45_44 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=GWC2_Planctomycetes_45_44_curated
PLM4_65_coex_sep16_scaffold_85_23
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(22960..24273)
DNA (1314bp) protein (438aa)
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.179)
Beta-ketoacyl synthase bin=GWC2_Planctomycetes_45_44 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_85_24
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(24270..24773)
DNA (504bp) protein (168aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ bin=GWF2_Planctomycetes_50_10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
(3R)-hydroxymyristoyl-ACP dehydratase
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_85_25
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(24826..25221)
DNA (396bp) protein (132aa)
Phosphopantetheine-binding protein bin=GWF2_Planctomycetes_50_10 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
acpP; acyl carrier protein
Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
PLM4_65_coex_sep16_scaffold_85_26
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(25344..25892)
DNA (549bp) protein (183aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA/FabZ bin=GWF2_Planctomycetes_50_10 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
(3R)-hydroxymyristoyl-ACP dehydratase
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_85_27

Not on your lists

26038..26493
DNA (456bp) protein (152aa)
Marine sediment metagenome DNA, contig: S12H4_S08863 {ECO:0000313|EMBL:GAI93553.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Bifunctional protein argHA bin=GWF2_Planctomycetes_42_9 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
argA; acetyltransferase
PLM4_65_coex_sep16_scaffold_85_28
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(26573..27535)
DNA (963bp) protein (321aa)
Putative uncharacterized protein bin=GWF2_Planctomycetes_50_10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
membrane protein
Tax=RBG_16_Planctomycetes_55_9_curated
PLM4_65_coex_sep16_scaffold_85_29
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

27735..29798
DNA (2064bp) protein (688aa)
Band 7 protein bin=GWF2_Planctomycetes_50_10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
membrane protein
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_coex_sep16_scaffold_85_30
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

29795..30703
DNA (909bp) protein (303aa)
Band 7 protein bin=GWF2_Planctomycetes_50_10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
Displaying items 1-30 of 66 in total

View Taxonomy