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PLM4_65_coex_sep16_scaffold_606

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_606_1
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..148)
DNA (147bp) protein (49aa)
Radical SAM domain protein bin=GWC2_Pelobacter_58_13 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_606_2
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(141..503)
DNA (363bp) protein (121aa)
id=4849446 bin=GWC2_Pelobacter_58_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_606_3
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(881..2548)
DNA (1668bp) protein (556aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AEK4_GEOSK
Radical SAM protein {ECO:0000313|EMBL:KIE43391.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase
PLM4_65_coex_sep16_scaffold_606_4
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2877..3341)
DNA (465bp) protein (155aa)
Putative uncharacterized protein bin=GWF2_Syntrophobacterales_56_9 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_65_coex_sep16_scaffold_606_5
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3582..5468)
DNA (1887bp) protein (629aa)
Putative polysaccharide-degrading enzyme Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SNY3_9DELT
Putative polysaccharide-degrading enzyme {ECO:0000313|EMBL:ERK90335.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
polysaccharide-degrading enzyme
PLM4_65_coex_sep16_scaffold_606_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5891..7045)
DNA (1155bp) protein (385aa)
Cell division protein FtsZ Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8J4_GEOUR
cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_606_7
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7225..8460)
DNA (1236bp) protein (412aa)
Cell division protein ftsA Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8J5_GEOUR
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
cell division protein FtsA
PLM4_65_coex_sep16_scaffold_606_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8483..9298)
DNA (816bp) protein (272aa)
Cell division protein FtsQ Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8J6_GEOUR
polypeptide-transport-associated domain-containing protein
Cell division protein FtsQ {ECO:0000256|HAMAP-Rule:MF_00911, ECO:0000256|SAAS:SAAS00006985}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_606_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9337..10299)
DNA (963bp) protein (321aa)
D-alanine--D-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00047}; EC=6.3.2.4 {ECO:0000255|HAMAP-Rule:MF_00047};; D-Ala-D-Ala ligase {ECO:0000255|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000255|HAMAP-Rule:MF_00047}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
D-alanine--D-alanine ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=DDL_GEOUR
D-alanine--D-alanine ligase
PLM4_65_coex_sep16_scaffold_606_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10315..11214)
DNA (900bp) protein (300aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000255|HAMAP-Rule:MF_00037}; EC=1.3.1.98 {ECO:0000255|HAMAP-Rule:MF_00037};; UDP-N-acetylmuramate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00037}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
UDP-N-acetylenolpyruvoylglucosamine reductase Tax=Geobacter uraniireducens (strain Rf4) RepID=MURB_GEOUR
PLM4_65_coex_sep16_scaffold_606_11
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11287..12666)
DNA (1380bp) protein (460aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
UDP-N-acetylmuramate--L-alanine ligase Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=MURC_GEOSL
murC; UDP-N-acetylmuramate--L-alanine ligase
PLM4_65_coex_sep16_scaffold_606_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12776..13891)
DNA (1116bp) protein (372aa)
murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000255|HAMAP-Rule:MF_00033}; EC=2.4.1.227 {ECO:0000255|HAMAP-Rule:MF_00033};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000255|HAMAP-Rule:MF_00033}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase Tax=Geobacter uraniireducens (strain Rf4) RepID=MURG_GEOUR
PLM4_65_coex_sep16_scaffold_606_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13888..14991)
DNA (1104bp) protein (368aa)
Lipid II flippase FtsW Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8K1_GEOUR
cell division protein FtsW
Putative lipid II flippase FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; Cell division protein FtsW {ECO:0000256|HAMAP-Rule:MF_00913}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_606_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14988..16349)
DNA (1362bp) protein (454aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000255|HAMAP-Rule:MF_00639}; EC=6.3.2.9 {ECO:0000255|HAMAP-Rule:MF_00639};; D-glutamic acid-adding enzyme {ECO:0000255|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000255|HAMAP-Rule:MF_00639}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=MURD_GEOUR
UDP-N-acetylmuramoylalanine--D-glutamate ligase
PLM4_65_coex_sep16_scaffold_606_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16434..17510)
DNA (1077bp) protein (359aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8K3_GEOUR
PLM4_65_coex_sep16_scaffold_606_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17510..18916)
DNA (1407bp) protein (469aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8K4_GEOUR
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
PLM4_65_coex_sep16_scaffold_606_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19146..20666)
DNA (1521bp) protein (507aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8K5_GEOUR
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
PLM4_65_coex_sep16_scaffold_606_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20709..22682)
DNA (1974bp) protein (658aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan synthetase FtsI {ECO:0000313|EMBL:ABQ28124.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABQ28124.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Peptidoglycan synthetase FtsI Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8K6_GEOUR
PLM4_65_coex_sep16_scaffold_606_19
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22679..23020)
DNA (342bp) protein (114aa)
Cell division protein FtsL Tax=Geobacter sulfurreducens RepID=FTSL_GEOSL
Cell division protein FtsL {ECO:0000256|HAMAP-Rule:MF_00910}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
ftsL; cell division septum formation protein FtsL
PLM4_65_coex_sep16_scaffold_606_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23106..24044)
DNA (939bp) protein (313aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000255|HAMAP-Rule:MF_01007}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Ribosomal RNA small subunit methyltransferase H Tax=Geobacter uraniireducens RepID=RSMH_GEOUR
mraW; S-adenosyl-methyltransferase MraW
PLM4_65_coex_sep16_scaffold_606_21
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(24044..24520)
DNA (477bp) protein (159aa)
Protein MraZ Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBP2_GEOBB
mraZ; cell division protein MraZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
PLM4_65_coex_sep16_scaffold_606_22
unknown

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24692..24793
DNA (102bp) protein (34aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_606_23
unknown

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24780..24953
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 23 items

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