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PLM4_65_coex_sep16_scaffold_710

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_710_1
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..282
DNA (282bp) protein (94aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
putative phosphoketolase (EC:4.1.2.22)
Probable phosphoketolase Tax=uncultured Desulfobacterium sp. RepID=E1YMH1_9DELT
PLM4_65_coex_sep16_scaffold_710_2
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

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307..993
DNA (687bp) protein (229aa)
Transaldolase bin=GWF2_Lentisphaerae_50_93 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
transaldolase
Tax=GWF2_Lentisphaerae_44_16_curated
PLM4_65_coex_sep16_scaffold_710_3
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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990..1271
DNA (282bp) protein (94aa)
transaldolase (EC:2.2.1.2)
Transaldolase bin=GWF2_Lentisphaerae_50_93 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_65_coex_sep16_scaffold_710_4
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1297..1941
DNA (645bp) protein (215aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase bin=GWF2_Geobacter_54_21 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
CDP-diacylglycerol--serine O-phosphatidyltransferase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_710_5
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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1970..2548
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CZQ1_HALOH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF69906.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
PLM4_65_coex_sep16_scaffold_710_6
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2859..3320
DNA (462bp) protein (154aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM11497.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
id=3080109 bin=GWF2_Geobacter_54_21 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
PLM4_65_coex_sep16_scaffold_710_7
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

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3485..4213
DNA (729bp) protein (243aa)
Putative aminopeptidase Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2N2_9PROT
Putative aminopeptidase {ECO:0000313|EMBL:EAU55518.1}; species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_710_8
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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4372..5250
DNA (879bp) protein (293aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00035E9B0C
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_47_18
PLM4_65_coex_sep16_scaffold_710_9
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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5350..5949
DNA (600bp) protein (200aa)
Uncharacterized protein bin=GWF2_Lentisphaerae_52_8 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35645.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_65_coex_sep16_scaffold_710_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6093..7988)
DNA (1896bp) protein (632aa)
Cyclic di-GMP phosphodiesterase response regulator RpfG {ECO:0000313|EMBL:GAM11151.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Putative PAS/PAC sensor protein bin=GWC2_Nitrospirae-rel_56_14 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
putative PAS/PAC sensor protein
PLM4_65_coex_sep16_scaffold_710_11
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7985..8935)
DNA (951bp) protein (317aa)
Response regulator receiver modulated diguanylate cyclase bin=GWC2_Geobacteraceae_55_20 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
diguanylate cyclase
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_710_12
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8925..11999)
DNA (3075bp) protein (1025aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Geobacteraceae_55_20 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PAS/PAC sensor hybrid histidine kinase
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_710_13
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12010..14628)
DNA (2619bp) protein (873aa)
MCP methyltransferase/methylesterase (EC:2.1.1.80 3.1.1.61)
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_710_14
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14727..15653)
DNA (927bp) protein (309aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WIX7_GEOS8
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_710_15
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15680..17149)
DNA (1470bp) protein (490aa)
Phospholipase D/Transphosphatidylase bin=GWC2_Pelobacter_58_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phospholipase D/transphosphatidylase
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM4_65_coex_sep16_scaffold_710_16
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17438..19816)
DNA (2379bp) protein (793aa)
Multi-sensor hybrid histidine kinase Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RE96_DESPD
multi-sensor hybrid histidine kinase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM4_65_coex_sep16_scaffold_710_17
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20113..21474)
DNA (1362bp) protein (454aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EA65_GEOBB
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_710_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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22123..22404
DNA (282bp) protein (94aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GC63_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24826.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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22406..22747
DNA (342bp) protein (114aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GC62_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24825.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_20

Not on your lists

22905..23270
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YQB8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD27564.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
type IV pilus assembly PilZ
PLM4_65_coex_sep16_scaffold_710_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23308..24315)
DNA (1008bp) protein (336aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEE7_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25802.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_22
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(25154..25774)
DNA (621bp) protein (207aa)
Transporter, RhtB family Tax=Geobacter metallireducens RepID=Q39XI4_GEOMG
RhtB family transporter
Transporter, RhtB family {ECO:0000313|EMBL:ABB31040.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_710_23
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(25776..27206)
DNA (1431bp) protein (477aa)
Peptidase S8 and S53 subtilisin kexin sedolisin Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CTS3_TRURR
peptidase S8 and S53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ADI15620.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
PLM4_65_coex_sep16_scaffold_710_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(27315..28106)
DNA (792bp) protein (264aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA38_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25568.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(28256..28699)
DNA (444bp) protein (148aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA38_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25568.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_26
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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28747..29556
DNA (810bp) protein (270aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000255|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000255|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000255|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000255|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000255|HAMAP-Rule:MF_01813}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE Tax=Geobacter uraniireducens (strain Rf4) RepID=UBIE_GEOUR
ubiquinone/menaquinone biosynthesis methyltransferase
PLM4_65_coex_sep16_scaffold_710_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(29665..31182)
DNA (1518bp) protein (506aa)
MJ0042 family finger-like protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6Y5_GEOUR
Zinc finger-domain-containing protein
MJ0042 family finger-like protein {ECO:0000313|EMBL:ABQ27553.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_710_28
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(31166..31732)
DNA (567bp) protein (189aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:ABQ27554.1}; EC=2.4.2.8 {ECO:0000313|EMBL:ABQ27554.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Hypoxanthine phosphoribosyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6Y6_GEOUR
PLM4_65_coex_sep16_scaffold_710_trna_1
unknown

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31975..32048
DNA (74bp)
transferRNA Arg
PLM4_65_coex_sep16_scaffold_710_29
unknown

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comp(32084..32209)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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