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PLM4_65_coex_sep16_scaffold_1161

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1161_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..891
DNA (891bp) protein (297aa)
Na+/H+ antiporter NhaD-like permease Tax=Microvirga sp. WSM3557 RepID=I4YWQ1_9RHIZ
Na+/H+ antiporter NhaD-like permease {ECO:0000313|EMBL:EIM28393.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Na+/H+ antiporter NhaD-like permease
PLM4_65_coex_sep16_scaffold_1161_2
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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938..1270
DNA (333bp) protein (111aa)
Hypothetical membrane protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LXJ5_SYNAS
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:ABC78802.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_65_coex_sep16_scaffold_1161_3
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1346..3871
DNA (2526bp) protein (842aa)
Band 7 protein bin=GWC2_Geobacteraceae_55_20 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_1161_4
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3942..4655)
DNA (714bp) protein (238aa)
DNA alkylation repair enzyme bin=GWF2_Lentisphaerae_52_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
DNA alkylation repair protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
PLM4_65_coex_sep16_scaffold_1161_5
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(4828..7854)
DNA (3027bp) protein (1009aa)
Putative PAS/PAC sensor protein bin=GWC2_ACD39_50_8 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_ACD39_50_8 organism_group=ACD39
putative PAS/PAC sensor protein
Tax=BJP_IG2158_Anaerolineales_38_74
PLM4_65_coex_sep16_scaffold_1161_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8519..9445)
DNA (927bp) protein (309aa)
Daunorubicin resistance ABC transporter ATPase subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDW4_GEOUR
daunorubicin resistance ABC transporter ATPase
Daunorubicin resistance ABC transporter ATPase subunit {ECO:0000313|EMBL:ABQ24230.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9468..10991)
DNA (1524bp) protein (508aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ABQ24227.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABQ24227.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PAS/PAC sensor hybrid histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDW1_GEOUR
multi-sensor signal transduction histidine kinase
PLM4_65_coex_sep16_scaffold_1161_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10991..13249)
DNA (2259bp) protein (753aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PAS/PAC sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDW0_GEOUR
multi-sensor signal transduction histidine kinase
PLM4_65_coex_sep16_scaffold_1161_9
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13400..14293)
DNA (894bp) protein (298aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7S7_GEODF
PLM4_65_coex_sep16_scaffold_1161_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14348..15922)
DNA (1575bp) protein (525aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24224.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_11
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15940..18480)
DNA (2541bp) protein (847aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
DNA gyrase subunit A Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7S5_GEODF
PLM4_65_coex_sep16_scaffold_1161_12
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(18569..19588)
DNA (1020bp) protein (340aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX4_GEOUR
PLM4_65_coex_sep16_scaffold_1161_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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19912..20178
DNA (267bp) protein (89aa)
Uncharacterized protein Tax=Amphimedon queenslandica RepID=I1EB74_AMPQE
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_coex_sep16_scaffold_1161_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20755..21855)
DNA (1101bp) protein (367aa)
DNA replication and repair protein RecF Tax=Geobacter uraniireducens (strain Rf4) RepID=RECF_GEOUR
recF; recombination protein F
DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21948..22913)
DNA (966bp) protein (322aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
DNA polymerase III subunit beta Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX2_GEOUR
PLM4_65_coex_sep16_scaffold_1161_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23135..24484)
DNA (1350bp) protein (450aa)
Chromosomal replication initiator protein DnaA Tax=Geobacter uraniireducens (strain Rf4) RepID=DNAA_GEOUR
dnaA; chromosomal replication initiation protein
Chromosomal replication initiator protein DnaA {ECO:0000255|HAMAP-Rule:MF_00377}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_17
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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24913..25062
DNA (150bp) protein (50aa)
50S ribosomal protein L34 Tax=Geobacter metallireducens RepID=RL34_GEOMG
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000255|HAMAP-Rule:MF_00391}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
PLM4_65_coex_sep16_scaffold_1161_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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25646..27286
DNA (1641bp) protein (547aa)
Membrane protein insertase YidC Tax=Geobacter uraniireducens (strain Rf4) RepID=YIDC_GEOUR
60 kDa inner membrane insertion protein
Membrane protein insertase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Foldase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000255|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000255|HAMAP-Rule:MF_01810}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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27312..28682
DNA (1371bp) protein (457aa)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
tRNA modification GTPase MnmE Tax=Geobacter uraniireducens (strain Rf4) RepID=MNME_GEOUR
trmE; tRNA modification GTPase TrmE
PLM4_65_coex_sep16_scaffold_1161_20
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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28954..30828
DNA (1875bp) protein (625aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Tax=Geobacter metallireducens RepID=MNMG_GEOMG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000255|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000255|HAMAP-Rule:MF_00129}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
PLM4_65_coex_sep16_scaffold_1161_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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30825..31478
DNA (654bp) protein (218aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.170 {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Ribosomal RNA small subunit methyltransferase G Tax=Geobacter uraniireducens (strain Rf4) RepID=RSMG_GEOUR
methyltransferase GidB
PLM4_65_coex_sep16_scaffold_1161_22
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(31992..33500)
DNA (1509bp) protein (503aa)
Gll3851 protein bin=GWF2_Lentisphaerae_52_8 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
recF; recombination protein F
Tax=GWC2_Geobacteraceae_48_7_curated
PLM4_65_coex_sep16_scaffold_1161_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(33656..34087)
DNA (432bp) protein (144aa)
Single-stranded DNA-binding protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9S2_GEOUR
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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34372..34878
DNA (507bp) protein (169aa)
Putative phosphohistidine phosphatase, SixA Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4M4_GEOUR
putative phosphohistidine phosphatase SixA
Putative phosphohistidine phosphatase, SixA {ECO:0000313|EMBL:ABQ26742.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_25
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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34956..35483
DNA (528bp) protein (176aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4V2_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26820.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_26
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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35507..36397
DNA (891bp) protein (297aa)
CHAD domain containing protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4M9_GEOUR
CHAD domain-containing protein
CHAD domain containing protein {ECO:0000313|EMBL:ABQ26747.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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36394..37932
DNA (1539bp) protein (513aa)
Ppx/GppA phosphatase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4N0_GEOUR
Ppx/GppA phosphatase
Ppx/GppA phosphatase {ECO:0000313|EMBL:ABQ26748.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1161_trna_1
unknown

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comp(38052..38126)
DNA (75bp)
transferRNA Glu
PLM4_65_coex_sep16_scaffold_1161_28
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38288..39049
DNA (762bp) protein (254aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_00057}; EC=2.7.7.38 {ECO:0000255|HAMAP-Rule:MF_00057};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000255|HAMAP-Rule:MF_00057}; Short=CKS {ECO:0000255|HAMAP-Rule:MF_00057};; Short=CMP-KDO synthase {ECO:0000255|HAMAP-Rule:MF_00057};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
3-deoxy-manno-octulosonate cytidylyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=KDSB_GEOUR
PLM4_65_coex_sep16_scaffold_1161_29
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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39122..39412
DNA (291bp) protein (97aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
CTP synthase Tax=Geobacter sulfurreducens RepID=PYRG_GEOSL
Displaying 30 items

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