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PLM4_65_coex_sep16_scaffold_1344

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1344_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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39..887
DNA (849bp) protein (283aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GER6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25921.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_2
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1053..2765
DNA (1713bp) protein (571aa)
phospholipase Tax=Porphyromonas macacae RepID=UPI00035C9EAC
Strain DSM 12611 Contig24, whole genome shotgun sequence {ECO:0000313|EMBL:KIO50762.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1344_3
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2853..3014)
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E6E0_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE02275.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_1344_4
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3407..4249
DNA (843bp) protein (281aa)
Cytochrome c, 12 heme-binding sites Tax=Geobacter sulfurreducens RepID=D7AFZ4_GEOSK
Cytochrome C {ECO:0000313|EMBL:KIE41337.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
omcX; cytochrome c, 12 heme-binding sites
PLM4_65_coex_sep16_scaffold_1344_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4408..6042
DNA (1635bp) protein (545aa)
AMP-dependent synthetase and ligase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFJ3_GEOUR
peptide synthase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABQ26198.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6039..7040
DNA (1002bp) protein (334aa)
3-beta hydroxysteroid dehydrogenase/isomerase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFJ2_GEOUR
3-beta hydroxysteroid dehydrogenase/isomerase
3-beta hydroxysteroid dehydrogenase/isomerase {ECO:0000313|EMBL:ABQ26197.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7030..7746
DNA (717bp) protein (239aa)
4'-phosphopantetheinyl transferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFJ1_GEOUR
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ABQ26196.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_8
unknown

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comp(7854..8141)
DNA (288bp) protein (96aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1344_9
Aquifex aeolicus, Aquifex, Aquificales, Aquificae, Aquificae, Bacteria

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8348..9220
DNA (873bp) protein (291aa)
Uncharacterized protein Tax=Aquifex aeolicus (strain VF5) RepID=O67397_AQUAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAC07368.1}; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Aquifex.;" source="Aquifex aeolicus (strain VF5).;"
PLM4_65_coex_sep16_scaffold_1344_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9252..9854
DNA (603bp) protein (201aa)
Isochorismatase hydrolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GES8_GEOUR
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ABQ25933.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9988..11052
DNA (1065bp) protein (355aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GES7_GEOUR
PLM4_65_coex_sep16_scaffold_1344_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11100..11519
DNA (420bp) protein (140aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
Peptidyl-prolyl cis-trans isomerase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LR53_9BURK
FKBP-type peptidylprolyl isomerase
PLM4_65_coex_sep16_scaffold_1344_13
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11679..12866)
DNA (1188bp) protein (396aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZA5_LEPCP
phosphoglycerate dehydrogenase-like oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM4_65_coex_sep16_scaffold_1344_14
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12859..13941)
DNA (1083bp) protein (361aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoserine aminotransferase
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM4_65_coex_sep16_scaffold_1344_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14131..14601
DNA (471bp) protein (157aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
tRNA (cytidine(34)-2'-O)-methyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6N2_GEOUR
tRNA/rRNA methyltransferase SpoU
PLM4_65_coex_sep16_scaffold_1344_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14703..15656)
DNA (954bp) protein (318aa)
Import inner membrane translocase, subunit Tim44 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBD0_GEOUR
import inner membrane translocase subunit Tim44
Import inner membrane translocase, subunit Tim44 {ECO:0000313|EMBL:ABQ25107.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_1344_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15713..15907)
DNA (195bp) protein (65aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6N5_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27453.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying 17 items

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