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PLM4_65_coex_sep16_scaffold_2769

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2769_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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108..806
DNA (699bp) protein (233aa)
Binding-protein-dependent transport systems inner membrane component Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7D0_GEOUR
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABQ27698.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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803..1903
DNA (1101bp) protein (367aa)
ABC transporter related protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7C9_GEOUR
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ABQ27697.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1935..2951)
DNA (1017bp) protein (339aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Aspartate-semialdehyde dehydrogenase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAZ9_GEOUR
PLM4_65_coex_sep16_scaffold_2769_4
unknown

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3415..3549
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2769_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3653..4753)
DNA (1101bp) protein (367aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Aspartate-semialdehyde dehydrogenase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAZ8_GEOUR
PLM4_65_coex_sep16_scaffold_2769_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5075..5686)
DNA (612bp) protein (204aa)
Toluene tolerance family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAZ5_GEOUR
toluene tolerance family protein
Toluene tolerance family protein {ECO:0000313|EMBL:ABQ25249.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5846..6298)
DNA (453bp) protein (151aa)
Mammalian cell entry related domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAZ3_GEOUR
hypothetical protein
Mammalian cell entry related domain protein {ECO:0000313|EMBL:ABQ25247.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_8
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6345..7184)
DNA (840bp) protein (280aa)
Organic solvent tolerance ABC transporter, ATP-binding protein Tax=Geobacter metallireducens RepID=Q39XJ5_GEOMG
organic solvent tolerance ABC transporter ATP-binding protein
Organic solvent tolerance ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ABB31029.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_2769_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7281..8051)
DNA (771bp) protein (257aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB11_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25245.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8271..8615)
DNA (345bp) protein (115aa)
Uncharacterized protein bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PLM4_65_coex_sep16_scaffold_2769_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8822..9583
DNA (762bp) protein (254aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7Z0_GEOUR
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ABQ27908.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9565..10386
DNA (822bp) protein (274aa)
nadE; NAD synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000255|HAMAP-Rule:MF_00193}; EC=6.3.1.5 {ECO:0000255|HAMAP-Rule:MF_00193};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
NH(3)-dependent NAD(+) synthetase Tax=Geobacter uraniireducens (strain Rf4) RepID=NADE_GEOUR
PLM4_65_coex_sep16_scaffold_2769_13
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10352..11233
DNA (882bp) protein (294aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
Ribosomal RNA small subunit methyltransferase I Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5A1_GEODF
uroporphyrin-III C/tetrapyrrole methyltransferase
PLM4_65_coex_sep16_scaffold_2769_14
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11233..12726
DNA (1494bp) protein (498aa)
ATPase, AAA family Tax=Geobacter metallireducens RepID=Q39X77_GEOMG
ATPase AAA
ATPase AAA {ECO:0000313|EMBL:AJE04064.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_2769_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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12948..14129
DNA (1182bp) protein (394aa)
Major facilitator superfamily MFS_1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB53_GEOUR
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ25190.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_2769_16
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14989..16212
DNA (1224bp) protein (408aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB43_GEOUR
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
PLM4_65_coex_sep16_scaffold_2769_17
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16228..16920
DNA (693bp) protein (231aa)
Cytochrome c Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EB83_GEOBB
cytochrome c
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_2769_18
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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16990..19377
DNA (2388bp) protein (796aa)
Cytochrome C family protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7X2_GEODF
C-type polyheme cytochrome OmcC {ECO:0000313|EMBL:GAM08045.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
cytochrome C family protein
PLM4_65_coex_sep16_scaffold_2769_19
unknown

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comp(19374..19445)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 19 items

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