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PLM4_65_coex_sep16_scaffold_3085

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3085_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..795
-----------------
DNA (795bp)
protein (265aa)
Malonyl-CoA--acyl carrier protein transacylase Tax=Geobacter metallireducens RepID=Q39V02_GEOMG
fabD-1; malonyl-CoA--acyl carrier protein transacylase
Malonyl CoA-ACP transacylase {ECO:0000313|EMBL:AJY69972.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_3085_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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803..1225
-----------------
DNA (423bp)
protein (141aa)
Thioesterase superfamily protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7J5_GEOUR
Acyl-CoA thioesterase {ECO:0000313|EMBL:AJY69971.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
thioesterase superfamily protein
PLM4_65_coex_sep16_scaffold_3085_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1222..2601
-----------------
DNA (1380bp)
protein (460aa)
Radical SAM domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7J4_GEOUR
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABQ27762.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3085_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2683..3423
-----------------
DNA (741bp)
protein (247aa)
Short-chain dehydrogenase/reductase SDR Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7J3_GEOUR
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ27761.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3085_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3633..4619
-----------------
DNA (987bp)
protein (329aa)
3-oxoacyl-(Acyl carrier protein) synthase II Tax=Geobacter sulfurreducens RepID=D7AEZ9_GEOSK
fabF-1; 3-oxoacyl-(acyl carrier protein) synthase II
Beta-ketoacyl synthase {ECO:0000313|EMBL:AJY70180.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_3085_6
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4616..5662
-----------------
DNA (1047bp)
protein (349aa)
Beta-ketoacyl synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7J1_GEOUR
beta-ketoacyl synthase
Beta-ketoacyl synthase {ECO:0000313|EMBL:AJE04572.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3085_7
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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5622..6038
-----------------
DNA (417bp)
protein (139aa)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7J0_GEOUR
hydroxymyristoyl-ACP dehydratase
Hydroxymyristoyl-ACP dehydratase {ECO:0000313|EMBL:AJE04961.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3085_8
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6035..6667
-----------------
DNA (633bp)
protein (211aa)
Outer membrane lipoprotein carrier/sorting protein LolA Tax=Geobacter sulfurreducens RepID=D7AEZ6_GEOSK
cell envelope biogenesis protein LolA
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3085_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6926..7648
-----------------
DNA (723bp)
protein (241aa)
Outer membrane lipoprotein LolB, putative Tax=Geobacter sulfurreducens RepID=D7AEZ5_GEOSK
outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_3085_10
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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7655..10171
-----------------
DNA (2517bp)
protein (839aa)
Exporter, putative Tax=Geobacter sulfurreducens RepID=D7AEZ4_GEOSK
RND transporter
RND transporter {ECO:0000313|EMBL:AJE04575.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3085_11
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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10175..11488
-----------------
DNA (1314bp)
protein (438aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobalamin-binding-like domain Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7ADL5_GEOSK
Radical SAM protein {ECO:0000313|EMBL:KIE43917.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase
PLM4_65_coex_sep16_scaffold_3085_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11496..12968
-----------------
DNA (1473bp)
protein (491aa)
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobalamin-binding-like domain Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74GJ9_GEOSL
Radical SAM protein {ECO:0000313|EMBL:AJY69979.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase
PLM4_65_coex_sep16_scaffold_3085_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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13049..13402
-----------------
DNA (354bp)
protein (118aa)
Putative uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_coex_sep16_scaffold_3085_14
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

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13399..13800
-----------------
DNA (402bp)
protein (134aa)
Putative Transcriptional regulator (Modular protein) bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
putative transcriptional regulator
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_65_coex_sep16_scaffold_3085_15
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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13755..14075
-----------------
DNA (321bp)
protein (107aa)
Histidine triad (HIT) protein bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
histidine triad (HIT) protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_3085_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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14230..15051
-----------------
DNA (822bp)
protein (274aa)
Methylthioadenosine nucleosidase {ECO:0000313|EMBL:ABQ27136.1}; EC=3.2.2.16 {ECO:0000313|EMBL:ABQ27136.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Methylthioadenosine nucleosidase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5R8_GEOUR
purine phosphorylase family 1
PLM4_65_coex_sep16_scaffold_3085_17
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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15356..16306
-----------------
DNA (951bp)
protein (317aa)
dacB; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00035C65DF
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_3085_18
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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16475..16774
-----------------
DNA (300bp)
protein (100aa)
Excinuclease ABC, C subunit domain protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALF5_PELPD
excinuclease ABC subunit C
Excinuclease ABC, C subunit domain protein {ECO:0000313|EMBL:ABK98175.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_3085_19
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16753..17376
-----------------
DNA (624bp)
protein (208aa)
3'-to-5' exonuclease, putative Tax=Geobacter metallireducens RepID=Q39R54_GEOMG
3'-to-5' exonuclease
Tax=GWC2_Geobacteraceae_48_7_curated
PLM4_65_coex_sep16_scaffold_3085_20
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17406..17684
-----------------
DNA (279bp)
protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM09361.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Uncharacterized protein bin=GWB2_Geobacter-like_52_12 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
PLM4_65_coex_sep16_scaffold_3085_21
unknown

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18101..18382
-----------------
DNA (282bp)
protein (94aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_3085_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18730..20169
-----------------
DNA (1440bp)
protein (480aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I {ECO:0000313|EMBL:ABQ28393.1}; EC=1.2.1.12 {ECO:0000313|EMBL:ABQ28393.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Glyceraldehyde-3-phosphate dehydrogenase, type I Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9C5_GEOUR
PLM4_65_coex_sep16_scaffold_3085_23
bacterium UASB270, Bacteria

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20259..20522
-----------------
DNA (264bp)
protein (88aa)
Acetyltransferase, GNAT family Tax=Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 / NBRC 102448/ NCIMB 2269) RepID=I0JJ16_HALH3
Acetyltransferase, GNAT family {ECO:0000313|EMBL:GAK61289.1}; species="Bacteria.;" source="bacterium UASB270.;"
GNAT family acetyltransferase
Displaying 23 items

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