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PLM4_65_coex_sep16_scaffold_7454

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_7454_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3..254
DNA (252bp) protein (84aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
phosphatidylserine decarboxylase (EC:4.1.1.65)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_7454_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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768..935
DNA (168bp) protein (56aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_7454_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1065..2147
DNA (1083bp) protein (361aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85)
3-isopropylmalate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_7454_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2147..3154
DNA (1008bp) protein (336aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_7454_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3183..3503
DNA (321bp) protein (107aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_7454_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3452..4243
DNA (792bp) protein (264aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
Pseudouridylate synthase I bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_7454_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4473..5579
DNA (1107bp) protein (369aa)
Putative formate dehydrogenase family accessory protein (FdhD) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein (FdhD)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_7454_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5740..6018
DNA (279bp) protein (93aa)
id=3227803 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_7454_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6059..6622
DNA (564bp) protein (188aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 9 items

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