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PLM4_65_coex_sep16_scaffold_7308

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_7308_1
Brevibacillus panacihumi, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1..1431
DNA (1431bp) protein (477aa)
Uncharacterized protein Tax=Brevibacillus panacihumi W25 RepID=V6M5N0_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EST53879.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus panacihumi W25.;"
extracellular solute-binding protein, family 5 middle family protein 9
PLM4_65_coex_sep16_scaffold_7308_2
RBG_16_NC10_65_8_curated, NC10, Bacteria

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1516..2319
DNA (804bp) protein (268aa)
Peptide ABC transporter Tax=Brevibacillus panacihumi W25 RepID=V6M3F6_9BACL
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_NC10_65_8_curated
PLM4_65_coex_sep16_scaffold_7308_3
RBG_16_NC10_65_8_curated, NC10, Bacteria

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2730..3122
DNA (393bp) protein (131aa)
Binding-protein-dependent transport systems inner membrane component bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dipeptide transport system permease protein
Tax=RBG_16_NC10_65_8_curated
PLM4_65_coex_sep16_scaffold_7308_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3230..4042
DNA (813bp) protein (271aa)
Transcriptional regulator bin=GWC2_Methylomirabilis_70_16 species=Rhizobium sp. CF142 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:BAQ39938.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
PLM4_65_coex_sep16_scaffold_7308_5
R_NC10_66_22, NC10, Bacteria

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4282..5025
DNA (744bp) protein (248aa)
ABC-type sugar transport systems, permease component bin=bin7_NC10_sister species=Paracoccus aminophilus genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC-type sugar transport systems, permease component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_6
R_NC10_66_22, NC10, Bacteria

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5022..5915
DNA (894bp) protein (298aa)
ABC-type sugar transport systems, permease component bin=bin7_NC10_sister species=Paracoccus aminophilus genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC-type sugar transport systems, permease component
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_7
R_NC10_66_22, NC10, Bacteria

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5951..7150
DNA (1200bp) protein (400aa)
Peptidase M24 Tax=Paenibacillus sp. Aloe-11 RepID=H6CPY1_9BACL
peptidase M24
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_8
R_NC10_66_22, NC10, Bacteria

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7308..7919
DNA (612bp) protein (204aa)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_9

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8017..8202
DNA (186bp) protein (62aa)
hypothetical protein Tax=Salinicoccus carnicancri RepID=UPI0002F22CB0
Marine sediment metagenome DNA, contig: S01H1_S22288 {ECO:0000313|EMBL:GAG22012.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter ATP-binding protein
PLM4_65_coex_sep16_scaffold_7308_10
R_NC10_66_22, NC10, Bacteria

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8309..9655
DNA (1347bp) protein (449aa)
Sugar ABC superfamily ATP binding cassette transporter, substrate-binding bin=GWA2_Methylomirabilis_73_35 species=Mobiluncus mulieris genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_11
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9737..10129
DNA (393bp) protein (131aa)
Endoribonuclease L-PSP bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
endoribonuclease L-PSP
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_65_coex_sep16_scaffold_7308_12
R_NC10_66_22, NC10, Bacteria

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10144..11214
DNA (1071bp) protein (357aa)
hypothetical protein Tax=Succinispira mobilis RepID=UPI0003705AC6
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_7308_13
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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11216..12271
DNA (1056bp) protein (352aa)
TRAP dicarboxylate transporter, DctP subunit Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LS80_TEPAE
TRAP dicarboxylate transporter subunit DctP
Contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIX15653.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
PLM4_65_coex_sep16_scaffold_7308_14
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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12229..12684
DNA (456bp) protein (152aa)
hypothetical protein Tax=Curvibacter lanceolatus RepID=UPI00037B7044
Contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIX14182.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
tripartite ATP-independent periplasmic transporter, DctQ component
PLM4_65_coex_sep16_scaffold_7308_15
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12691..13980
DNA (1290bp) protein (430aa)
Uncharacterized protein Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4KY07_9DELT
TRAP C4-dicarboxylate transport system permease DctM
Tax=RBG_16_Deltaproteobacteria_49_23_curated
Displaying 15 items

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