ggKbase home page

PLM4_65_coex_sep16_scaffold_4809

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4809_1
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(2..250)
DNA (249bp) protein (83aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 bin=bin3_NC10 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
30S ribosomal protein S13
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(390..503)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 bin=GWC2_Pelobacter_58_13 species=unknown genus=Coprococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
LSU ribosomal protein L36P
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(588..806)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ1_9BACT
infA; translation initiation factor IF-1
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(845..1576)
DNA (732bp) protein (244aa)
map; methionine aminopeptidase (EC:3.4.11.18) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
map; methionine aminopeptidase (EC:3.4.11.18)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1625..2269)
DNA (645bp) protein (215aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=KAD_THEYD
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_6
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(2444..3763)
DNA (1320bp) protein (440aa)
Protein translocase subunit SecY Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI8_9BACT
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_7
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(3760..4206)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI7_9BACT
rplO; 50S ribosomal protein L15
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_8
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(4203..4409)
DNA (207bp) protein (69aa)
50S ribosomal protein L30 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B6563F
50S ribosomal protein L30
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_9
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(4412..5008)
DNA (597bp) protein (199aa)
30S ribosomal protein S5 bin=bin3_NC10 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_10
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(5008..5376)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=B5Y971_COPPD
rplR; 50S ribosomal protein L18
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_11
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(5436..5975)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI3_9BACT
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_12
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(6036..6434)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Geobacillus caldoxylosilyticus RepID=UPI000309C270
rpsH; 30S ribosomal protein S8, and regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_13
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists


comp(6508..6693)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI1_9BACT
rpsZ; 30S ribosomal protein S14
Tax=RBG_16_NC10_65_8_curated
PLM4_65_coex_sep16_scaffold_4809_14
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(6706..7368)
DNA (663bp) protein (221aa)
rplE; 50S ribosomal protein L5 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rplE; 50S ribosomal protein L5
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_15
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(7372..7701)
DNA (330bp) protein (110aa)
50S ribosomal protein L24 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKH9_9BACT
rplX; 50S ribosomal protein L24
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_16
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(7755..8123)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000363917C
rplN; 50S ribosomal protein L14
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_17
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(8209..8481)
DNA (273bp) protein (91aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 bin=bin3_NC10 species=Clostridium sp. CAG:440 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
Ribosomal protein S17
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_18
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(8483..8728)
DNA (246bp) protein (82aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=bin3_NC10 species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
50S ribosomal protein L29
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_19
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(8725..9153)
DNA (429bp) protein (143aa)
50S ribosomal protein L16 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKH5_9BACT
rplP; 50S ribosomal protein L16
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_20
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(9175..9909)
DNA (735bp) protein (245aa)
30S ribosomal protein S3 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKH4_9BACT
rpsC; 30S ribosomal protein S3
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_21
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(9921..10268)
DNA (348bp) protein (116aa)
rplV; 50S ribosomal protein L22 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rplV; 50S ribosomal protein L22
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_coex_sep16_scaffold_4809_22
R_NC10_66_22, NC10, Bacteria

Not on your lists


comp(10357..10557)
DNA (201bp) protein (67aa)
30S ribosomal protein S19 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK36_9BACT
rpsS; 30S ribosomal protein S19
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying 22 items

View Taxonomy