ggKbase home page

PLM4_65_coex_sep16_scaffold_111

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_111_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

200..937
DNA (738bp) protein (246aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
RNA methyltransferase, TrmH family, group 1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFL5_GEOUR
RNA methyltransferase
PLM4_65_coex_sep16_scaffold_111_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

934..1197
DNA (264bp) protein (88aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFL6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26221.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1273..1857
DNA (585bp) protein (195aa)
LemA family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFL7_GEOUR
LemA family protein
LemA family protein {ECO:0000313|EMBL:ABQ26222.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1868..2722
DNA (855bp) protein (285aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX8_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26223.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2775..3410
DNA (636bp) protein (212aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX9_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26224.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_6
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..4919
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Sensor histidine kinase, NtrB-related protein Tax=Geobacter metallireducens RepID=Q39U10_GEOMG
sensor histidine kinase NtrB-like protein
PLM4_65_coex_sep16_scaffold_111_7
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4931..6271
DNA (1341bp) protein (447aa)
Sigma-54-dependent transcriptional response regulator Tax=Geobacter metallireducens RepID=Q39U11_GEOMG
sigma-54-dependent transcriptional response regulator
Sigma-54-dependent transcriptional response regulator {ECO:0000313|EMBL:ABB32263.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_111_8
unknown

Not on your lists

comp(6370..6600)
DNA (231bp) protein (77aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_111_9
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6703..7086
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39U12_GEOMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB32262.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_111_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7079..9742
DNA (2664bp) protein (888aa)
Tetratricopeptide TPR_2 repeat protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G428_GEOUR
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABQ26546.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_111_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9746..11107
DNA (1362bp) protein (454aa)
Sugar transferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G427_GEOUR
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABQ26545.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11138..11983
DNA (846bp) protein (282aa)
Polysaccharide export protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G426_GEOUR
polysaccharide export protein
Polysaccharide export protein {ECO:0000313|EMBL:ABQ26544.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12032..13537
DNA (1506bp) protein (502aa)
Lipopolysaccharide biosynthesis protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G425_GEOUR
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ABQ26543.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13616..14443
DNA (828bp) protein (276aa)
non-specific protein-tyrosine kinase (EC:2.7.10.2)
Non-specific protein-tyrosine kinase {ECO:0000313|EMBL:ABQ26542.1}; EC=2.7.10.2 {ECO:0000313|EMBL:ABQ26542.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Non-specific protein-tyrosine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G424_GEOUR
PLM4_65_coex_sep16_scaffold_111_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14521..15708
DNA (1188bp) protein (396aa)
AAA ATPase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G423_GEOUR
ATPase AAA
AAA ATPase {ECO:0000313|EMBL:ABQ26541.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_16
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15766..17025
DNA (1260bp) protein (420aa)
Uncharacterized protein bin=GWF2_Geobacter_54_21 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJY68212.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_coex_sep16_scaffold_111_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17028..17882
DNA (855bp) protein (285aa)
Polysaccharide deacetylase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G421_GEOUR
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABQ26539.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17997..18908
DNA (912bp) protein (304aa)
ABC-2 type transporter Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G420_GEOUR
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_19
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18931..20235
DNA (1305bp) protein (435aa)
ABC transporter related protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G419_GEOUR
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ABQ26537.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_20
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

20255..21433
DNA (1179bp) protein (393aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SU59_9DELT
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=RBG_16_RIF03_38_10_curated
PLM4_65_coex_sep16_scaffold_111_21
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21518..22657
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase Tax=Bradyrhizobium sp. WSM471 RepID=H5YF07_9BRAD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EHR01468.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
acyl-CoA dehydrogenase
PLM4_65_coex_sep16_scaffold_111_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22736..25600
DNA (2865bp) protein (955aa)
hypothetical protein Tax=Fischerella sp. PCC 9339 RepID=UPI000304EB59
amino acid adenylation protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_coex_sep16_scaffold_111_23
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

25677..26339
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2ANH2_9BACT
UDP-glucose 4-epimerase
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_65_coex_sep16_scaffold_111_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26390..27334
DNA (945bp) protein (315aa)
Glycosyl transferase, family 2 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G409_GEOUR
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABQ26527.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_25
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27375..28286
DNA (912bp) protein (304aa)
Glycosyl transferase family 2 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KD79_METEX
Glycosyl transferase family 2 {ECO:0000313|EMBL:EHP94510.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
glycosyl transferase family protein
PLM4_65_coex_sep16_scaffold_111_26
R_WOR_2_52_10, WOR-2, Bacteria

Not on your lists

28347..29378
DNA (1032bp) protein (344aa)
Glycosyl transferase, family 2 bin=GWC2_Geobacteraceae_55_20 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
putative glycosyltransferase
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_52_10_curated
PLM4_65_coex_sep16_scaffold_111_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29468..30502
DNA (1035bp) protein (345aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G405_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26523.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_28
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30514..31710
DNA (1197bp) protein (399aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G404_GEOUR
DegT/DnrJ/EryC1/StrS aminotransferase
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:ABQ26522.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_29
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31714..32547
DNA (834bp) protein (278aa)
Eight transmembrane protein EpsH Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G403_GEOUR
transmembrane protein EpsH
Eight transmembrane protein EpsH {ECO:0000313|EMBL:ABQ26521.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_111_30
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32534..33187
DNA (654bp) protein (218aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G402_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26520.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying items 1-30 of 59 in total

View Taxonomy