ggKbase home page

PLM4_65_coex_sep16_scaffold_293

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_293_1
unknown

Not on your lists

comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

331..1149
DNA (819bp) protein (273aa)
ABC-3 protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDT9_GEOUR
ABC-3 protein
ABC-3 protein {ECO:0000313|EMBL:ABQ24266.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_293_3
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

1211..2902
DNA (1692bp) protein (564aa)
id=4424740 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_65_coex_sep16_scaffold_293_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3153..3572
DNA (420bp) protein (140aa)
Putative nickel-responsive regulator Tax=Geobacter metallireducens RepID=NIKR_GEOMG
nikR; nickel responsive regulator
Putative nickel-responsive regulator {ECO:0000255|HAMAP-Rule:MF_00476}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_293_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3743..4198
DNA (456bp) protein (152aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
tRNA-adenosine deaminase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDS8_GEOUR
zinc-binding CMP/dCMP deaminase
PLM4_65_coex_sep16_scaffold_293_trna_1
unknown

Not on your lists

4209..4293
DNA (85bp)
transferRNA Ser
PLM4_65_coex_sep16_scaffold_293_6
unknown

Not on your lists

4552..5097
DNA (546bp) protein (182aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5289..5498
DNA (210bp) protein (70aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GCC6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24768.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_293_8
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5826..6230)
DNA (405bp) protein (135aa)
Transcriptional regulator, MerR family Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9G7_GEODF
MerR family transcriptional regulator
Helix-turn-helix transcriptional regulator, MerR family {ECO:0000313|EMBL:ACM20539.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_293_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6766..7074
DNA (309bp) protein (103aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA53_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ25540.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_293_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7089..9158
DNA (2070bp) protein (690aa)
SSS sodium solute transporter superfamily Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA54_GEOUR
SSS family solute/sodium (Na+) symporter
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ABQ25541.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_293_11
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9222..9761
DNA (540bp) protein (180aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EIE1_GEOBB
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_293_12
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9875..13123
DNA (3249bp) protein (1083aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA56_GEOUR
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_293_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13385..14431
DNA (1047bp) protein (349aa)
Thioesterase superfamily protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA57_GEOUR
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ABQ25544.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_293_14
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14520..15689
DNA (1170bp) protein (390aa)
Aminopeptidase, putative Tax=Geobacter metallireducens RepID=Q39UX3_GEOMG
aminopeptidase
Aminopeptidase, putative {ECO:0000313|EMBL:ABB31951.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
PLM4_65_coex_sep16_scaffold_293_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16284..17120
DNA (837bp) protein (279aa)
phbB; acetoacetyl-CoA reductase (EC:1.1.1.36)
Acetoacetyl-CoA reductase Tax=Modestobacter marinus (strain BC501) RepID=I4EWX3_MODMB
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_293_16
unknown

Not on your lists

comp(17327..17509)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_17
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(17636..18808)
DNA (1173bp) protein (391aa)
Thiolase family protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6F1_CALAS
thiolase family protein
Thiolase family protein {ECO:0000313|EMBL:BAM00839.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_65_coex_sep16_scaffold_293_18
Shewanella sp. YQH10, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19002..23573)
DNA (4572bp) protein (1524aa)
Acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=A1S332_SHEAM
Carbamoyl-phosphate synthase large subunit {ECO:0000313|EMBL:KFZ39015.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. YQH10.;"
acetyl-CoA carboxylase multifunctional carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase
PLM4_65_coex_sep16_scaffold_293_19
GWA2_Deltaproteobacteria_54_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24103..25542)
DNA (1440bp) protein (480aa)
Two component, sigma-54 specific, transcriptional regulator, Fis family bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
two component sigma-54 specific Fis family transcriptional regulator
Tax=GWA2_Deltaproteobacteria_54_12_curated
PLM4_65_coex_sep16_scaffold_293_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25559..28009)
DNA (2451bp) protein (817aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PAS/PAC sensor signal transduction histidine kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3J1_GEOUR
PAS/PAC sensor signal transduction histidine kinase
PLM4_65_coex_sep16_scaffold_293_21
unknown

Not on your lists

comp(28123..28290)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_22
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28424..29182)
DNA (759bp) protein (253aa)
3-ketoacyl-(Acyl-carrier-protein) reductase Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0Z0_9GAMM
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EAW42312.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
fabG; 3-ketoacyl-(acyl-carrier-protein) reductase
PLM4_65_coex_sep16_scaffold_293_23
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29225..30340)
DNA (1116bp) protein (372aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GRP2_THISH
Poly(R)-hydroxyalkanoic acid synthase subunit PhaC {ECO:0000313|EMBL:KAJ49601.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
PLM4_65_coex_sep16_scaffold_293_24
Clostridiales bacterium S5-A11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30352..31764)
DNA (1413bp) protein (471aa)
Genomic scaffold, msy_sf_23 Tax=Malassezia sympodialis (strain ATCC 42132) RepID=M5ES09_MALS4
Uncharacterized protein {ECO:0000313|EMBL:KGF10477.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostridiales bacterium S5-A11.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_293_25
unknown

Not on your lists

comp(32132..32839)
DNA (708bp) protein (236aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_26
unknown

Not on your lists

32986..33513
DNA (528bp) protein (176aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_293_27
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34283..35458
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase Tax=Geobacter sp. (strain M21) RepID=C6E4D9_GEOSM
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_293_28
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35500..36345
DNA (846bp) protein (282aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABQ27214.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABQ27214.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
3-hydroxyacyl-CoA dehydrogenase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5Z6_GEOUR
PLM4_65_coex_sep16_scaffold_293_29
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36358..37140
DNA (783bp) protein (261aa)
Short chain enoyl-CoA hydratase {ECO:0000313|EMBL:ABQ27213.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABQ27213.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Short chain enoyl-CoA hydratase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5Z5_GEOUR
enoyl-CoA hydratase/isomerase
Displaying items 1-30 of 37 in total

View Taxonomy