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PLM4_65_coex_sep16_scaffold_851

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_851_1
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(439..546)
DNA (108bp) protein (36aa)
Putative uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_53_11_curated
PLM4_65_coex_sep16_scaffold_851_2
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(751..918)
DNA (168bp) protein (56aa)
Uncharacterized protein bin=GWB2_Pelobacter_53_15 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_851_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1071..1325)
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD82_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ24464.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1497..2201
DNA (705bp) protein (235aa)
deoxyribonuclease V (EC:3.1.21.7)
Endonuclease V {ECO:0000255|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000255|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000255|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000255|HAMAP-Rule:MF_00801}; Short=DNase V {ECO:0000255|HAMAP-Rule:MF_00801};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Endonuclease V Tax=Geobacter uraniireducens (strain Rf4) RepID=NFI_GEOUR
PLM4_65_coex_sep16_scaffold_851_5
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2320..2790
DNA (471bp) protein (157aa)
Activator of Hsp90 ATPase 1 family protein bin=GWC2_Deltaproteobacteria_66_88 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_65_coex_sep16_scaffold_851_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2836..3243
DNA (408bp) protein (136aa)
DoxX family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6S7_GEOUR
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:ABQ27495.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_7
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3290..3973)
DNA (684bp) protein (228aa)
OmpA/MotB domain protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALG4_PELPD
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ABK98184.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
PLM4_65_coex_sep16_scaffold_851_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4303..4863
DNA (561bp) protein (187aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Pseudouridine synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEE6_GEOUR
pseudouridine synthase
PLM4_65_coex_sep16_scaffold_851_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4975..5856)
DNA (882bp) protein (294aa)
Pseudouridine synthase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD70_GEOUR
pseudouridine synthase
Pseudouridine synthase {ECO:0000313|EMBL:ABQ24473.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6030..7304
DNA (1275bp) protein (425aa)
Major facilitator superfamily MFS_1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD69_GEOUR
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABQ24472.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_11
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7442..8230
DNA (789bp) protein (263aa)
oxidoreductase Tax=Schlesneria paludicola RepID=UPI00029B3418
short-chain dehydrogenase/reductase
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_65_coex_sep16_scaffold_851_12
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8523..9254
DNA (732bp) protein (244aa)
Putative uncharacterized protein bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_851_13
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9404..9679)
DNA (276bp) protein (92aa)
Transcriptional regulator, XRE family Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M089_GEODF
XRE family transcriptional regulator
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM4_65_coex_sep16_scaffold_851_14
Desulfovibrio sp. 6_1_46AFAA, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9672..10007)
DNA (336bp) protein (112aa)
Putative uncharacterized protein Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UQV6_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW52011.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. 6_1_46AFAA.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_851_15
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10186..10518
DNA (333bp) protein (111aa)
3-demethylubiquinone-9 3-methyltransferase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QZ7_RHOFD
3-demethylubiquinone-9 3-methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM4_65_coex_sep16_scaffold_851_16
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10515..10742
DNA (228bp) protein (76aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLB9_SYNFM
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_57_12_curated
PLM4_65_coex_sep16_scaffold_851_17
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10925..12187)
DNA (1263bp) protein (421aa)
Membrane protein DUF445, putative bin=GWF2_Geobacter_54_21 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_851_18
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12471..12692)
DNA (222bp) protein (74aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD75_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE02237.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_851_19
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12682..13203)
DNA (522bp) protein (174aa)
Cupin superfamily barrel domain protein Tax=Geobacter sulfurreducens RepID=D7ADE0_GEOSK
cupin
Cupin superfamily barrel domain protein {ECO:0000313|EMBL:AAR33508.2}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_851_20
unknown

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comp(13336..13818)
DNA (483bp) protein (161aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_851_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13894..15120
DNA (1227bp) protein (409aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3I0_GEOUR
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ABQ26348.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_22
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15298..15579
DNA (282bp) protein (94aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3H9_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26347.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15736..16680
DNA (945bp) protein (315aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3H8_GEOUR
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ABQ26346.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_24
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16795..17013
DNA (219bp) protein (73aa)
Transcriptional regulator, AraC family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9Q0_GEOUR
AraC-like transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABQ28518.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_851_25

Not on your lists

17168..17641
DNA (474bp) protein (158aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YKF5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD37606.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HipA domain-containing protein
PLM4_65_coex_sep16_scaffold_851_26
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17643..17930
DNA (288bp) protein (96aa)
Transcriptional regulator Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD72_GEOUR
XRE family transcriptional regulator {ECO:0000313|EMBL:KJS00565.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
XRE family transcriptional regulator
PLM4_65_coex_sep16_scaffold_851_27
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17976..18335)
DNA (360bp) protein (120aa)
Activator of Hsp90 ATPase 1 family protein bin=GWC2_Geobacteraceae_55_20 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_coex_sep16_scaffold_851_28
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18368..19543)
DNA (1176bp) protein (392aa)
NADP oxidoreductase coenzyme F420-dependent Tax=Geobacter sp. (strain M18) RepID=E8WK54_GEOS8
coenzyme F420-dependent NADP oxidoreductase
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:ADW11539.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_coex_sep16_scaffold_851_29
unknown

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comp(19654..19875)
DNA (222bp) protein (74aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_851_30
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20187..20450
DNA (264bp) protein (88aa)
Transposase bin=GWF2_Lentisphaerae_52_8 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
transposase IS116/IS110/IS902 family protein
Tax=RBG_16_Deltaproteobacteria_58_17_curated
Displaying 30 items

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