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PLM4_65_coex_sep16_scaffold_4478

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_4478_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..417)
DNA (417bp) protein (139aa)
Chromosome partition protein Smc Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAU8_GEOUR
chromosome segregation protein SMC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(636..1154)
DNA (519bp) protein (173aa)
50S ribosomal protein L17 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL17_GEOUR
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1192..2214)
DNA (1023bp) protein (341aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
DNA-directed RNA polymerase subunit alpha Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAU6_GEOUR
PLM4_65_coex_sep16_scaffold_4478_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2248..2874)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS4_GEOUR
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_5
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2906..3301)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6F4_GEODF
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_4478_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3324..3692)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS13_GEOUR
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_7
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3725..3838)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
50S ribosomal protein L36 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
rpmJ; 50S ribosomal protein L36
PLM4_65_coex_sep16_scaffold_4478_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3873..4619)
DNA (747bp) protein (249aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Methionine aminopeptidase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAU2_GEOUR
methionine aminopeptidase
PLM4_65_coex_sep16_scaffold_4478_9
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4616..5269)
DNA (654bp) protein (218aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000255|HAMAP-Rule:MF_00235}; Short=AK {ECO:0000255|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000255|HAMAP-Rule:MF_00235};; ATP-AMP transphosphorylase {ECO:0000255|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000255|HAMAP-Rule:MF_00235}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Adenylate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=KAD_GEOUR
PLM4_65_coex_sep16_scaffold_4478_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5287..6594)
DNA (1308bp) protein (436aa)
Protein translocase subunit SecY Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAW2_GEOUR
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6597..7037)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL15_GEOUR
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_12
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7055..7234)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=RL30_GEODF
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM4_65_coex_sep16_scaffold_4478_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7265..7753)
DNA (489bp) protein (163aa)
30S ribosomal protein S5 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GAV9_GEOUR
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7777..8145)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL18_GEOUR
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8262..8660)
DNA (399bp) protein (133aa)
50S ribosomal protein L6 Tax=Geobacter uraniireducens (strain Rf4) RepID=RL6_GEOUR
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8687..9085)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS8_GEOUR
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_4478_17
unknown

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comp(9072..9188)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 17 items

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