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PLM0_60_coex_redo_sep16_scaffold_334

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_coex_redo_sep16_scaffold_334_1
Methanoregula boonei, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..177)
DNA (177bp) protein (59aa)
ABC-3 protein Tax=Methanoregula boonei (strain 6A8) RepID=A7I7H4_METB6
ABC-3 protein
ABC-3 protein {ECO:0000313|EMBL:ABS55685.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula boonei (strain 6A8).;"
PLM0_60_coex_redo_sep16_scaffold_334_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(170..964)
DNA (795bp) protein (265aa)
ABC transporter related protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U1T8_9CHLR
ABC transporter related protein {ECO:0000313|EMBL:EFH80822.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
ABC transporter
PLM0_60_coex_redo_sep16_scaffold_334_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(964..1764)
DNA (801bp) protein (267aa)
Periplasmic solute binding protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TXV8_9CHLR
Periplasmic solute binding protein {ECO:0000313|EMBL:EFH83155.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
periplasmic solute binding protein
PLM0_60_coex_redo_sep16_scaffold_334_4

Not on your lists

1811..2299
DNA (489bp) protein (163aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI00036E2F3F
Uncharacterized protein {ECO:0000313|EMBL:CBH98633.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ferric uptake regulator, Fur family
PLM0_60_coex_redo_sep16_scaffold_334_5
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2282..3673)
DNA (1392bp) protein (464aa)
putative circadian clock protein KaiC (EC:2.7.11.1)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000376DA4C
RecA-superfamily ATPase implicated in signal transduction {ECO:0000313|EMBL:EGJ31229.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
PLM0_60_coex_redo_sep16_scaffold_334_6
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(3670..4347)
DNA (678bp) protein (226aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI00037D5835
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:ACM05055.1}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
PLM0_60_coex_redo_sep16_scaffold_334_7
unknown

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4767..4970
DNA (204bp) protein (68aa)
hypothetical protein Tax=Streptomyces vitaminophilus RepID=UPI00037B313B
PLM0_60_coex_redo_sep16_scaffold_334_8
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5012..6052
DNA (1041bp) protein (347aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
L-threonine 3-dehydrogenase Tax=Sciscionella marina RepID=UPI0003728155
tdh; L-threonine 3-dehydrogenase
PLM0_60_coex_redo_sep16_scaffold_334_9
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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6053..7234
DNA (1182bp) protein (394aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Streptomyces sp. Mg1 RepID=B4VBD4_9ACTO
PLM0_60_coex_redo_sep16_scaffold_334_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7473..8552
DNA (1080bp) protein (360aa)
Putative DNA topoisomerase I Tax=Azospirillum brasilense Sp245 RepID=G8AQ67_AZOBR
DNA topoisomerase I
DNA topoisomerase I {ECO:0000313|EMBL:AIB13694.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM0_60_coex_redo_sep16_scaffold_334_11
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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comp(8562..10028)
DNA (1467bp) protein (489aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
6-phosphogluconate dehydrogenase, decarboxylating Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y2G5_THEBD
6-phosphogluconate dehydrogenase
PLM0_60_coex_redo_sep16_scaffold_334_12
unknown

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10143..10337
DNA (195bp) protein (65aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_334_13
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10334..11077
DNA (744bp) protein (248aa)
Membrane-associated phospholipid phosphatase Tax=Sphingomonas sp. SKA58 RepID=Q1N996_9SPHN
Membrane-associated phospholipid phosphatase {ECO:0000313|EMBL:EAT07636.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
phosphoesterase PA-phosphatase
PLM0_60_coex_redo_sep16_scaffold_334_14
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11167..13326
DNA (2160bp) protein (720aa)
Two-component hybrid sensor and histidine kinase regulator (EC:2.7.13.3)
Two-component hybrid sensor and histidine kinase regulator {ECO:0000313|EMBL:CCG02701.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCG02701.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Two-component hybrid sensor and histidine kinase regulator Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RP40_BLASD
PLM0_60_coex_redo_sep16_scaffold_334_15
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(13337..13750)
DNA (414bp) protein (138aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM0_60_coex_redo_sep16_scaffold_334_16
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13750..14385)
DNA (636bp) protein (212aa)
Putative Uncharacterized short-chain type dehydrogenase/reductase y4lA {ECO:0000313|EMBL:CDI02470.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDI02470.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
Short-chain dehydrogenase/reductase SDR Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TFZ9_9CHLR
dehydrogenase
PLM0_60_coex_redo_sep16_scaffold_334_17
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14382..15266)
DNA (885bp) protein (295aa)
Galactosyltransferase Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5X9E9_MYCNE
galactosyltransferase
Galactosyltransferase {ECO:0000313|EMBL:AHC24326.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum VKM Ac-1815D.;"
PLM0_60_coex_redo_sep16_scaffold_334_18
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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15434..16147
DNA (714bp) protein (238aa)
Methyltransferase type 11 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UBL1_CELFN
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADG74106.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
PLM0_60_coex_redo_sep16_scaffold_334_19
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(16137..16646)
DNA (510bp) protein (170aa)
CBS domain containing protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CGW6_THET1
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:ACZ42987.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM0_60_coex_redo_sep16_scaffold_334_20

Not on your lists

comp(16650..16850)
DNA (201bp) protein (67aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CGW5_THET1
Uncharacterized protein {ECO:0000313|EMBL:KKN10446.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM0_60_coex_redo_sep16_scaffold_334_21
unknown

Not on your lists

comp(16860..17429)
DNA (570bp) protein (190aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_334_22
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(17426..18460)
DNA (1035bp) protein (345aa)
glucosamine--fructose-6-phosphate aminotransferase (isomerizing) (EC:2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase (Isomerizing) {ECO:0000313|EMBL:ACM07168.1}; EC=2.6.1.16 {ECO:0000313|EMBL:ACM07168.1};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Glucosamine--fructose-6-phosphate aminotransferase (Isomerizing) Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4J2_THERP
PLM0_60_coex_redo_sep16_scaffold_334_23
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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comp(18485..20065)
DNA (1581bp) protein (527aa)
Transmembrane efflux protein bin=GWC2_Chloroflexi_73_18 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
EmrB/QacA subfamily drug resistance transporter
Tax=GWC2_RIF_CHLX_73_18_curated
PLM0_60_coex_redo_sep16_scaffold_334_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(20090..20485)
DNA (396bp) protein (132aa)
Glyoxalase-like domain
Glyoxalase-like domain {ECO:0000313|EMBL:AIF82617.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM0_60_coex_redo_sep16_scaffold_334_25
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20482..21015)
DNA (534bp) protein (178aa)
OsmC family protein Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WE72_KINRD
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:ABS05111.1}; species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
PLM0_60_coex_redo_sep16_scaffold_334_26
unknown

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21048..21785
DNA (738bp) protein (246aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_334_27
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21808..23220
DNA (1413bp) protein (471aa)
hypothetical protein Tax=Cellulomonas sp. JC225 RepID=UPI00030B2EF6
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AEE45700.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM0_60_coex_redo_sep16_scaffold_334_28
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23380..24249
DNA (870bp) protein (290aa)
Phosphate transporter Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8TZK8_SULAD
phosphate transporter
Tax=CG_Rhodocyc_01
PLM0_60_coex_redo_sep16_scaffold_334_29
unknown

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24246..24365
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 29 items

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