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PLM0_60_coex_redo_sep16_scaffold_575

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_coex_redo_sep16_scaffold_575_1
unknown

Not on your lists

2..460
DNA (459bp) protein (153aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_575_2
GWA2_RIF_OD1_07_46_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(465..842)
DNA (378bp) protein (126aa)
UPF0102 protein SYNAS_23220 bin=GWC2_Deltaproteobacteria_56_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_RIF_OD1_07_46_15_curated
PLM0_60_coex_redo_sep16_scaffold_575_3
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(806..1414)
DNA (609bp) protein (203aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Ribonuclease HII Tax=Geobacter sulfurreducens RepID=RNH2_GEOSL
ribonuclease HII
PLM0_60_coex_redo_sep16_scaffold_575_4
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1522..1926)
DNA (405bp) protein (135aa)
50S ribosomal protein L19 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKM0_9FIRM
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
PLM0_60_coex_redo_sep16_scaffold_575_5
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(1923..2597)
DNA (675bp) protein (225aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM0_60_coex_redo_sep16_scaffold_575_6
Lactobacillus vaginalis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2600..3094)
DNA (495bp) protein (165aa)
Ribosome maturation factor RimM Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2EWA6_9LACO
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus vaginalis DSM 5837 = ATCC 49540.;"
ribosome maturation factor RimM
PLM0_60_coex_redo_sep16_scaffold_575_7
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

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comp(3091..3414)
DNA (324bp) protein (108aa)
UPF0109 protein ANT_16030 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=GWB2_Chloroflexi_54_36_curated
PLM0_60_coex_redo_sep16_scaffold_575_8
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3500..3748)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 Tax=Desulforudis audaxviator (strain MP104C) RepID=RS16_DESAP
30S ribosomal protein S16
Tax=BJP_08E140C01_Clostridiales_46_19
PLM0_60_coex_redo_sep16_scaffold_575_9
Selenomonas artemidis, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(3766..5118)
DNA (1353bp) protein (451aa)
Signal recognition particle protein Tax=Selenomonas artemidis F0399 RepID=E7N4G9_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas artemidis F0399.;"
signal recognition particle subunit FFH/SRP54 (srp54)
PLM0_60_coex_redo_sep16_scaffold_575_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5119..5448)
DNA (330bp) protein (110aa)
Sigma-70, region 4 Tax=Sulfobacillus acidophilus RepID=F8I2I6_SULAT
sigma-70, region 4
UPF0122 protein TPY_1229 {ECO:0000256|HAMAP-Rule:MF_00245}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus acidophilus (strain TPY).;"
PLM0_60_coex_redo_sep16_scaffold_575_11
unknown

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comp(5747..5881)
DNA (135bp) protein (45aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_575_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5932..6288
DNA (357bp) protein (119aa)
Transcriptional regulator AsnC family Tax=Patulibacter medicamentivorans RepID=H0EAQ7_9ACTN
Transcriptional regulator AsnC family {ECO:0000313|EMBL:EHN09232.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
AsnC family transcriptional regulator
PLM0_60_coex_redo_sep16_scaffold_575_13
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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6303..7067
DNA (765bp) protein (255aa)
inositol monophosphatase Tax=Methylococcus capsulatus RepID=UPI000308FE40
inositol monophosphatase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM0_60_coex_redo_sep16_scaffold_575_14

Not on your lists

comp(7035..7739)
DNA (705bp) protein (235aa)
Phosphotransferase domain-containing protein (Fragment) Tax=mine drainage metagenome RepID=T0Z8F0_9ZZZZ
Phosphotransferase domain-containing protein {ECO:0000313|EMBL:EQD44281.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PHP domain protein
PLM0_60_coex_redo_sep16_scaffold_575_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(7739..8581)
DNA (843bp) protein (281aa)
Signal recognition particle receptor FtsY Tax=Firmicutes bacterium ASF500 RepID=V2YDA2_9FIRM
signal recognition particle-docking protein FtsY
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM0_60_coex_redo_sep16_scaffold_575_16
Exiguobacterium sp. AT1b, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8622..11780)
DNA (3159bp) protein (1053aa)
Chromosome partition protein Smc Tax=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) RepID=C4L5Z7_EXISA
smc; chromosome segregation ATPase
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b).;"
PLM0_60_coex_redo_sep16_scaffold_575_17
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(11844..12794)
DNA (951bp) protein (317aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Ribonuclease 3 Tax=Firmicutes bacterium CAG:176 RepID=R6DBA5_9FIRM
ribonuclease III
PLM0_60_coex_redo_sep16_scaffold_575_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12761..13009)
DNA (249bp) protein (83aa)
Acyl carrier protein bin=GWF2_Lentisphaerae_52_8 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
acpP; acyl carrier protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM0_60_coex_redo_sep16_scaffold_575_19
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13098..13838)
DNA (741bp) protein (247aa)
hypothetical protein Tax=Amycolatopsis methanolica RepID=UPI0003773D2D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ24077.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM0_60_coex_redo_sep16_scaffold_575_20
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14058..14912)
DNA (855bp) protein (285aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="Desmospora sp. 8437.;"
[acyl-carrier-protein] S-malonyltransferase (EC:2.3.1.39)
malonyl CoA-ACP transacylase Tax=Sporolactobacillus inulinus RepID=UPI000255C66B
PLM0_60_coex_redo_sep16_scaffold_575_21
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15175..15582)
DNA (408bp) protein (136aa)
ATPase subunit H Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AW91_RUBXD
ATPase subunit H
Tax=RBG_16_Actinobacteria_64_13_curated
PLM0_60_coex_redo_sep16_scaffold_575_22
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(15657..16079)
DNA (423bp) protein (141aa)
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; Flags: Precursor;; species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
phosphopantetheine adenylyltransferase Tax=Thermodesulfatator atlanticus RepID=UPI0003B4AA52
PLM0_60_coex_redo_sep16_scaffold_575_23
unknown

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comp(16186..16344)
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 23 items

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