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PLM0_60_coex_redo_sep16_scaffold_1483

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_coex_redo_sep16_scaffold_1483_1
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

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comp(38..355)
DNA (318bp) protein (106aa)
10 kDa chaperonin Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDS0_DICT6
groES; co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12).;"
PLM0_60_coex_redo_sep16_scaffold_1483_2
unknown

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comp(461..697)
DNA (237bp) protein (79aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_1483_3
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(700..1707)
DNA (1008bp) protein (336aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DUF9_DESRL
metalloendopeptidase glycoprotease family
PLM0_60_coex_redo_sep16_scaffold_1483_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(1781..2386)
DNA (606bp) protein (202aa)
Ribosomal-protein-alanine acetyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C284_SPHTD
ribosomal-protein-alanine acetyltransferase
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ACZ38351.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM0_60_coex_redo_sep16_scaffold_1483_5
Pelodictyon luteolum, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(2386..2928)
DNA (543bp) protein (181aa)
Protease, putative Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B6P5_PELLD
protease
Protease, putative {ECO:0000313|EMBL:ABB22986.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM; 273)).;"
PLM0_60_coex_redo_sep16_scaffold_1483_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(2948..3403)
DNA (456bp) protein (152aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM0_60_coex_redo_sep16_scaffold_1483_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3354..4250)
DNA (897bp) protein (299aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Thiamine-monophosphate kinase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBZ6_GEOUR
thiamine-monophosphate kinase
PLM0_60_coex_redo_sep16_scaffold_1483_8
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(4250..4843)
DNA (594bp) protein (198aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Thiamine-phosphate synthase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASC6_RUBXD
PLM0_60_coex_redo_sep16_scaffold_1483_9
unknown

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comp(4888..5667)
DNA (780bp) protein (260aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_1483_10
Rothia mucilaginosa, Rothia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(5667..5885)
DNA (219bp) protein (73aa)
Mycothiol system anti-sigma-R factor Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R446_9MICC
Anti-sigma factor
Mycothiol system anti-sigma-R factor {ECO:0000313|EMBL:EET75610.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia.;" source="Rothia mucilaginosa ATCC 25296.;"
PLM0_60_coex_redo_sep16_scaffold_1483_11
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(5902..6480)
DNA (579bp) protein (193aa)
RNA polymerase sigma factor Tax=Nitrolancetus hollandicus Lb RepID=I4EEG4_9CHLR
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM0_60_coex_redo_sep16_scaffold_1483_12
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6736..7767)
DNA (1032bp) protein (344aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6P0F6_9FIRM
PLM0_60_coex_redo_sep16_scaffold_1483_13
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7892..9121)
DNA (1230bp) protein (410aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|SAAS:SAAS00237208}; EC=2.7.8.- {ECO:0000256|SAAS:SAAS00276260};; EC=2.7.8.7 {ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase {ECO:0000256|SAAS:SAAS00237164}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Uncharacterized protein Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLH4_9CLOT
carbohydrate kinase
PLM0_60_coex_redo_sep16_scaffold_1483_14
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(9179..9919)
DNA (741bp) protein (247aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI000344F03B
Uncharacterized protein {ECO:0000313|EMBL:KIE08979.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
hypothetical protein
PLM0_60_coex_redo_sep16_scaffold_1483_15
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10030..11874)
DNA (1845bp) protein (615aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZR1_THEOJ
Displaying 15 items

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