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PLM3-1_170_b2_sep16_scaffold_24

Search features with annotation key words

Displaying items 61-90 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_24_61
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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53836..55935
DNA (2100bp) protein (700aa)
regulatory protein ArsR bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
regulatory protein ArsR
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_62
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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56178..58835
DNA (2658bp) protein (886aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribonucleoside-diphosphate reductase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_63
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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58872..59975
DNA (1104bp) protein (368aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_64
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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59979..61184
DNA (1206bp) protein (402aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUX8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06332.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
conserved exported protein of unknown function
PLM3-1_170_b2_sep16_scaffold_24_trna_1
unknown

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comp(61194..61267)
DNA (74bp)
transferRNA Gly
PLM3-1_170_b2_sep16_scaffold_24_65

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comp(61336..61884)
DNA (549bp) protein (183aa)
nep; Ribosomal RNA small subunit methyltransferase Nep1 (EC:2.1.1.-)
ribosome biogenesis protein; K14568 essential for mitotic growth 1 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:KKN00210.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_24_66

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61930..62238
DNA (309bp) protein (103aa)
Ribonuclease P protein component 4 {ECO:0000256|HAMAP-Rule:MF_00757}; Short=RNase P component 4 {ECO:0000256|HAMAP-Rule:MF_00757};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00757};; Rpp21 {ECO:0000256|HAMAP-Rule:MF_00757}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_169_G08.;"
ribonuclease P protein component 4 (EC:3.1.26.5) bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
RNase P subunit
PLM3-1_170_b2_sep16_scaffold_24_67
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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62270..62722
DNA (453bp) protein (151aa)
30S ribosomal protein S19e Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A642_NITMS
30S ribosomal protein S19e
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_24_68
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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62732..63010
DNA (279bp) protein (93aa)
Putative DNA-binding protein Tax=Thaumarchaeota archaeon N4 RepID=V6ARB2_9ARCH
Putative DNA-binding protein {ECO:0000313|EMBL:CDI04963.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
double-stranded DNA-binding domain protein
PLM3-1_170_b2_sep16_scaffold_24_69
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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63053..64123
DNA (1071bp) protein (357aa)
Zn-dependent oxidoreductase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Zn-dependent oxidoreductase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_70

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64138..64998
DNA (861bp) protein (287aa)
citryl-CoA lyase (EC:4.1.3.34)
Citrate lyase, beta subunit Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KLJ9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKN00214.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_24_71
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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65070..65660
DNA (591bp) protein (197aa)
riboflavin synthase subunit alpha bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
riboflavin synthase subunit alpha
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_72
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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65734..66414
DNA (681bp) protein (227aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K02858 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC:4.1.99.12)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_73
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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66432..66830
DNA (399bp) protein (133aa)
6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] bin=bin2_Thaum tax=bin2_Thaum organism_group=Archaeon
6,7-dimethyl-8-ribityllumazine synthase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_74

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66827..67576
DNA (750bp) protein (250aa)
GTP cyclohydrolase III Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2ER45_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL59902.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
GTP cyclohydrolase IIA
PLM3-1_170_b2_sep16_scaffold_24_75
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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67570..68763
DNA (1194bp) protein (398aa)
amidohydrolase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
amidohydrolase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_76
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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68750..69403
DNA (654bp) protein (218aa)
Diaminohydroxyphosphoribosylaminopyrimidine reductase (EC:1.1.1.-)
Diaminohydroxyphosphoribosylaminopyrimidine reductase {ECO:0000313|EMBL:AJW69970.1}; EC=1.1.1.- {ECO:0000313|EMBL:AJW69970.1};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
Putative RibD C-terminal domain protein Tax=uncultured marine crenarchaeote HF4000_APKG3J11 RepID=B3T7T4_9ARCH
PLM3-1_170_b2_sep16_scaffold_24_77
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(69400..69915)
DNA (516bp) protein (172aa)
Transcription factor E Tax=Thaumarchaeota archaeon N4 RepID=V6AQW9_9ARCH
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Transcription initiation factor TFIIE {ECO:0000256|HAMAP-Rule:MF_01909}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
tfe; Transcription factor E
PLM3-1_170_b2_sep16_scaffold_24_78
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(69936..70463)
DNA (528bp) protein (176aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_79
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(70453..71580)
DNA (1128bp) protein (376aa)
GTP1/OBG protein Tax=Thaumarchaeota archaeon N4 RepID=V6AR25_9ARCH
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hflX; GTPase HflX
PLM3-1_170_b2_sep16_scaffold_24_80
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(71606..72670)
DNA (1065bp) protein (355aa)
phosphate uptake regulator PhoU bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
phosphate uptake regulator PhoU
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_81
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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72755..73213
DNA (459bp) protein (153aa)
PUA domain-containing protein; K07398 conserved protein with predicted RNA binding PUA domain bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PUA domain-containing protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_82
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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73228..73569
DNA (342bp) protein (114aa)
ubiquitin-associated domain-containing protein; K03626 nascent polypeptide-associated complex subunit alpha bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
nac; Nascent polypeptide-associated complex protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_83
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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73606..73938
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AV41_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06402.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_24_84
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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74134..74631
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUA2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06401.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_24_85
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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74900..75256
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BBC7_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW69985.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_24_86
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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75273..75608
DNA (336bp) protein (112aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_87
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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75605..76933
DNA (1329bp) protein (443aa)
ubiD; UbiD family decarboxylase (EC:4.1.1.-)
UbiD family decarboxylase Tax=Thaumarchaeota archaeon N4 RepID=V6AV19_9ARCH
UbiD family decarboxylase {ECO:0000313|EMBL:CDI06399.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
PLM3-1_170_b2_sep16_scaffold_24_88
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(76973..77902)
DNA (930bp) protein (310aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ctaB; Protoheme IX farnesyltransferase 2 (EC:2.5.1.-)
Protoheme IX farnesyltransferase 2 Tax=Thaumarchaeota archaeon N4 RepID=V6AR92_9ARCH
PLM3-1_170_b2_sep16_scaffold_24_89
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(77961..78389)
DNA (429bp) protein (143aa)
Transcriptional regulator, AsnC family Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D1J8_9ARCH
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EIJ65591.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
putative transcriptional regulator, AsnC family
Displaying items 61-90 of 102 in total

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