ggKbase home page

PLM3-1_170_b2_sep16_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_24_1
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(3..218)
DNA (216bp) protein (72aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B847_9ARCH
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:AFS81679.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_24_2
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(211..1044)
DNA (834bp) protein (278aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000255|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00156}; Short=KPHMT {ECO:0000255|HAMAP-Rule:MF_00156};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b2_sep16_scaffold_24_3
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists

comp(1037..1783)
DNA (747bp) protein (249aa)
Uncharacterized protein Tax=Nitrosopumilaceae RepID=K0B978_9ARCH
PF02006 family protein
PF02006 family protein {ECO:0000313|EMBL:AJA91892.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM3-1_170_b2_sep16_scaffold_24_4
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(1777..2667)
DNA (891bp) protein (297aa)
GHMP kinase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BEZ7_9ARCH
GHMP kinase
GHMP kinase {ECO:0000313|EMBL:AFS83620.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_24_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

3042..3710
DNA (669bp) protein (223aa)
Phosphate uptake regulator, PhoU Tax=Thaumarchaeota archaeon N4 RepID=V6AVU5_9ARCH
Phosphate uptake regulator, PhoU {ECO:0000313|EMBL:CDI06718.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
phosphate uptake regulator PhoU
PLM3-1_170_b2_sep16_scaffold_24_6
Marine Group I thaumarchaeote SCGC RSA3, Thaumarchaeota, Archaea

Not on your lists

comp(3712..4233)
DNA (522bp) protein (174aa)
nudF; ADP-ribose pyrophosphatase (EC:3.6.1.13)
GDP-mannose pyrophosphatase NudK protein {ECO:0000313|EMBL:KFM16225.1}; EC=3.6.1.13 {ECO:0000313|EMBL:KFM16225.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC RSA3.;"
NUDIX hydrolase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZG5_9ARCH
PLM3-1_170_b2_sep16_scaffold_24_7
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4253..5143)
DNA (891bp) protein (297aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D3F2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EIJ66245.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_24_8
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5275..6462
DNA (1188bp) protein (396aa)
ABC-type transport system, involved in lipoprotein release, permease component Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZG3_9ARCH
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:EGP94552.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_24_9

Not on your lists

6485..7165
DNA (681bp) protein (227aa)
Lipoprotein-releasing system (ABC transporter), ATP-binding protein lolD Tax=Thaumarchaeota archaeon N4 RepID=V6AVV0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM23559.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter
PLM3-1_170_b2_sep16_scaffold_24_10

Not on your lists

7162..8463
DNA (1302bp) protein (434aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM23558.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_24_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

8496..8876
DNA (381bp) protein (127aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

9118..10443
DNA (1326bp) protein (442aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ABC-1 domain protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_13
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10444..10827)
DNA (384bp) protein (128aa)
Hsp20/alpha crystallin family protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D3G4_9ARCH
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EIJ66257.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
Hsp20/alpha crystallin family protein
PLM3-1_170_b2_sep16_scaffold_24_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

10907..11485
DNA (579bp) protein (193aa)
tmk; dTMP kinase (EC:2.7.4.9)
thymidylate kinase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

11490..12737
DNA (1248bp) protein (416aa)
metal dependent phosphohydrolase; K06885 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
metal dependent phosphohydrolase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_16
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

12734..13411
DNA (678bp) protein (226aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00055191}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00055199};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
Uridylate kinase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZF3_9ARCH
uridylate kinase
PLM3-1_170_b2_sep16_scaffold_24_17
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(13398..13712)
DNA (315bp) protein (105aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13789..14346
DNA (558bp) protein (186aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_19
unknown

Not on your lists

14451..14567
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_24_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(14592..15236)
DNA (645bp) protein (215aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_21
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(15433..16479)
DNA (1047bp) protein (349aa)
H(+)-transporting two-sector ATPase {ECO:0000313|EMBL:CDI06738.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CDI06738.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
H(+)-transporting two-sector ATPase Tax=Thaumarchaeota archaeon N4 RepID=V6AVW5_9ARCH
ATP synthase, subunit C
PLM3-1_170_b2_sep16_scaffold_24_22
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(16507..17211)
DNA (705bp) protein (235aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

17419..18888
DNA (1470bp) protein (490aa)
Ammonium transporter NrgA Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHJ1_NITGG
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_24_24
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

18967..19743
DNA (777bp) protein (259aa)
rhodanese domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rhodanese domain-containing protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_25
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(19740..21842)
DNA (2103bp) protein (701aa)
Putative V-type ATP synthase subunit I Tax=Thaumarchaeota archaeon N4 RepID=V6AVX4_9ARCH
Putative V-type ATP synthase subunit I {ECO:0000313|EMBL:CDI06742.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
V-type ATPase 116 kDa subunit
PLM3-1_170_b2_sep16_scaffold_24_26

Not on your lists

21939..22532
DNA (594bp) protein (198aa)
V-type ATP synthase subunit E Tax=Thaumarchaeota archaeon N4 RepID=V6AVX1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL25079.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
H+transporting two-sector ATPase E subunit
PLM3-1_170_b2_sep16_scaffold_24_27
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

22535..24313
DNA (1779bp) protein (593aa)
H+transporting two-sector ATPase alpha/subunit beta bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
H+transporting two-sector ATPase alpha/subunit beta
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_28
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

24310..25695
DNA (1386bp) protein (462aa)
V-type ATP synthase beta chain Tax=Thaumarchaeota archaeon N4 RepID=V6AVY8_9ARCH
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
atpB; V-type ATP synthase beta chain
PLM3-1_170_b2_sep16_scaffold_24_29
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

25696..26331
DNA (636bp) protein (212aa)
V-type ATPase subunit D; K02120 V-type H+-transporting ATPase subunit D [EC:3.6.3.14] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
atpD; V-type ATP synthase subunit D
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_24_30
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

26331..26462
DNA (132bp) protein (44aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZD7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EGP94526.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
Displaying items 1-30 of 102 in total

View Taxonomy