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PLM3-1_170_b2_sep16_scaffold_65

Search features with annotation key words

Displaying items 61-90 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_65_59
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(54024..54290)
DNA (267bp) protein (89aa)
Rhodanese-like protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D048_9ARCH
Sulfurtransferase
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_65_60
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(54294..54986)
DNA (693bp) protein (231aa)
ERCC4 domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6ARB9_9ARCH
ERCC4 domain protein {ECO:0000313|EMBL:CDI05276.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ERCC4 domain-containing protein
PLM3-1_170_b2_sep16_scaffold_65_61
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(55019..55411)
DNA (393bp) protein (131aa)
Prefoldin subunit beta Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID44_NITGG
pfdB; prefoldin, subunit beta
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_65_62
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(55435..55680)
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B5X2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFI17903.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_63

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comp(55664..55879)
DNA (216bp) protein (72aa)
50S ribosomal protein L37 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI000370B2D2
Ribosomal protein L37AE/L43A (RP-L37Ae, RPL37A) {ECO:0000313|EMBL:AIF00711.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_137_A09.;"
rpl37ae; 50S ribosomal protein L37Ae
PLM3-1_170_b2_sep16_scaffold_65_64
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(55881..56687)
DNA (807bp) protein (269aa)
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
3' exoribonuclease family, domain 1
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_65
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(56690..57406)
DNA (717bp) protein (239aa)
RNase PH (EC:2.7.7.56); K11600 exosome complex component RRP41 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
exosome complex exonuclease 1 (EC:3.1.13.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_66

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comp(57387..58094)
DNA (708bp) protein (236aa)
Exosome complex component Rrp4 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0B7Z6_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM20503.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
exosome complex RNA-binding protein Rrp4
PLM3-1_170_b2_sep16_scaffold_65_67
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(58091..58780)
DNA (690bp) protein (230aa)
RNA-associated protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Shwachman-Bodian-Diamond syndrome protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_68
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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58867..59499
DNA (633bp) protein (211aa)
RNA polymerase insert Tax=Thaumarchaeota archaeon N4 RepID=V6AS69_9ARCH
RNA polymerase insert {ECO:0000313|EMBL:CDI05268.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
RNA polymerase insert
PLM3-1_170_b2_sep16_scaffold_65_69
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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59530..59892
DNA (363bp) protein (121aa)
50S ribosomal protein L18e Tax=Nitrosopumilaceae RepID=K0B5F4_9ARCH
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000313|EMBL:AFS80327.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_65_70

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59885..60358
DNA (474bp) protein (158aa)
50S ribosomal protein L13 Tax=uncultured marine crenarchaeote HF4000_APKG5E24 RepID=B3T8C9_9ARCH
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_149_F07.;"
LSU ribosomal protein L13P
PLM3-1_170_b2_sep16_scaffold_65_71
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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60359..60802
DNA (444bp) protein (148aa)
30S ribosomal protein S9P Tax=Thaumarchaeota archaeon N4 RepID=V6ARV2_9ARCH
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003817}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
30S ribosomal protein S9
PLM3-1_170_b2_sep16_scaffold_65_72
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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60806..61543
DNA (738bp) protein (246aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Nucleotidyl transferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_73
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(61540..62115)
DNA (576bp) protein (192aa)
3-isopropylmalate dehydratase small subunit Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B2Q7_9ARCH
3-isopropylmalate dehydratase small subunit
3-isopropylmalate dehydratase small subunit {ECO:0000313|EMBL:AFS80323.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_65_74
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(62116..63531)
DNA (1416bp) protein (472aa)
leuC; 3-isopropylmalate isomerase subunit, dehydratase component (EC:4.2.1.33)
3-isopropylmalate dehydratase, large subunit Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CV38_9ARCH
3-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:EGP93153.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
PLM3-1_170_b2_sep16_scaffold_65_75

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comp(63618..64100)
DNA (483bp) protein (161aa)
3-isopropylmalate dehydratase, small subunit Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5B8_NITMS
Uncharacterized protein {ECO:0000313|EMBL:KKL99009.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
3-isopropylmalate dehydratase small subunit
PLM3-1_170_b2_sep16_scaffold_65_76
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(64097..64636)
DNA (540bp) protein (180aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
3-isopropylmalate dehydratase large subunit 1 Tax=Thaumarchaeota archaeon N4 RepID=V6ARU7_9ARCH
homoaconitate hydratase family protein
PLM3-1_170_b2_sep16_scaffold_65_77
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(64651..65229)
DNA (579bp) protein (193aa)
leuC; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
3-isopropylmalate dehydratase large subunit Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D060_9ARCH
PLM3-1_170_b2_sep16_scaffold_65_78
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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65249..66091
DNA (843bp) protein (281aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_79

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66124..66699
DNA (576bp) protein (192aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK98012.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_80
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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66687..67133
DNA (447bp) protein (149aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_81
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(67126..67560)
DNA (435bp) protein (145aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AR99_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05256.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_82
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(67771..68736)
DNA (966bp) protein (322aa)
2:oxoacid-ferredoxin oxidoreductase, beta subunit (EC:1.2.7.3)
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_83
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(68726..70639)
DNA (1914bp) protein (638aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_84

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71024..71896
DNA (873bp) protein (291aa)
Glyoxylate reductase protein {ECO:0000313|EMBL:KFM21855.1}; EC=1.1.1.26 {ECO:0000313|EMBL:KFM21855.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-B03.;"
glyoxylate reductase (EC:1.1.1.26)
lactate dehydrogenase Tax=Nitrosopumilus sp. SJ RepID=UPI0003652106
PLM3-1_170_b2_sep16_scaffold_65_85
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(71893..72105)
DNA (213bp) protein (71aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_86
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(72181..73470)
DNA (1290bp) protein (430aa)
FAD dependent oxidoreductase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
FAD dependent oxidoreductase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_trna_6
unknown

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comp(73515..73613)
DNA (99bp)
transferRNA Ser
PLM3-1_170_b2_sep16_scaffold_65_87
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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73768..75597
DNA (1830bp) protein (610aa)
hypothetical protein Tax=Nitrosopumilus RepID=UPI0003720BD9
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AJM91967.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
Displaying items 61-90 of 188 in total

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