ggKbase home page

PLM3-1_170_b2_sep16_scaffold_529

Search features with annotation key words

Displaying items 31-60 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_529_31
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(20757..21473)
DNA (717bp) protein (239aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_32
unknown

Not on your lists

comp(21906..22928)
DNA (1023bp) protein (341aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_33
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(23001..24089)
DNA (1089bp) protein (363aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_34
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

24404..24649
DNA (246bp) protein (82aa)
transcriptional regulator bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
transcriptional regulator
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_35
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

24658..25818
DNA (1161bp) protein (387aa)
cysS1; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000313|EMBL:AFU58835.1}; EC=6.1.1.16 {ECO:0000313|EMBL:AFU58835.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Cysteine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGB2_NITGG
PLM3-1_170_b2_sep16_scaffold_529_36
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

25815..26522
DNA (708bp) protein (236aa)
Gcn5-related N-acetyltransferase (GNAT) domain-containing protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM3-1_170_b2_sep16_scaffold_529_37
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(26515..27453)
DNA (939bp) protein (313aa)
dys; putative deoxyhypusine synthase (EC:2.5.1.46)
Putative deoxyhypusine synthase Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KIB6_9ARCH
Putative deoxyhypusine synthase {ECO:0000313|EMBL:EGG42901.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
PLM3-1_170_b2_sep16_scaffold_529_38
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

27537..28625
DNA (1089bp) protein (363aa)
ino1; myo-inositol-1-phosphate synthase (EC:5.5.1.4)
Myo-inositol-1-phosphate synthase {ECO:0000313|EMBL:AFU58838.1}; EC=5.5.1.4 {ECO:0000313|EMBL:AFU58838.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Myo-inositol-1-phosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIH4_NITGG
PLM3-1_170_b2_sep16_scaffold_529_39
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

28753..32226
DNA (3474bp) protein (1158aa)
Putative SMC domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6ARP3_9ARCH
Putative SMC domain protein {ECO:0000313|EMBL:CDI05406.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
SMC domain-containing protein
PLM3-1_170_b2_sep16_scaffold_529_40
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(32223..33191)
DNA (969bp) protein (323aa)
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative peptide ABC transporter ATP-binding protein y4tS
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_41

Not on your lists

comp(33243..34178)
DNA (936bp) protein (312aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL69465.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
oligopeptide/dipeptide ABC transporter ATPase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
oligopeptide/dipeptide ABC transporter ATPase
PLM3-1_170_b2_sep16_scaffold_529_42
unknown

Not on your lists

34236..34553
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_43
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


34603..35892
DNA (1290bp) protein (430aa)
aspS; aspartate--tRNA(Asn) ligase (EC:6.1.1.23)
aspartyl-tRNA synthetase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_44
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(36261..37277)
DNA (1017bp) protein (339aa)
isopropylmalate/isohomocitrate dehydrogenase (EC:1.1.1.85)
id=14427805 bin=bin2_Thaum tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_45
unknown

Not on your lists

comp(37474..37572)
DNA (99bp) protein (33aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_46
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(37759..39276)
DNA (1518bp) protein (506aa)
2-isopropylmalate synthase {ECO:0000313|EMBL:CDI05832.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CDI05832.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
2-isopropylmalate synthase Tax=Thaumarchaeota archaeon N4 RepID=V6AT57_9ARCH
isopropylmalate/citramalate/homocitrate synthases
PLM3-1_170_b2_sep16_scaffold_529_47
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(39266..39757)
DNA (492bp) protein (164aa)
Putative acetolactate synthase small subunit {ECO:0000313|EMBL:CDI05833.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CDI05833.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ilvH; putative acetolactate synthase small subunit (EC:2.2.1.6)
Putative acetolactate synthase small subunit Tax=Thaumarchaeota archaeon N4 RepID=V6ATR9_9ARCH
PLM3-1_170_b2_sep16_scaffold_529_48
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(39766..41454)
DNA (1689bp) protein (563aa)
ilvB; putative acetolactate synthase large subunit (EC:2.2.1.6)
acetolactate synthase large subunit, biosynthetic type bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_49
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

41736..42140
DNA (405bp) protein (135aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
SnoaL-like domain protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_50
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(42137..42958)
DNA (822bp) protein (274aa)
DhnA-type fructose-1,6-bisphosphate aldolase (EC:4.2.1.-); K08321 putative autoinducer-2 (AI-2) aldolase [EC:4.1.2.-] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
lsrF; putative aldolase LsrF (EC:4.1.2.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_51
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(42993..44036)
DNA (1044bp) protein (348aa)
alcohol dehydrogenase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Alcohol dehydrogenase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_52
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

Not on your lists

comp(44069..44365)
DNA (297bp) protein (99aa)
ATP synthase, subunit F
ATP synthase, subunit F {ECO:0000313|EMBL:AJA92287.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
vacuolar H+transporting two-sector ATPase F subunit bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b2_sep16_scaffold_529_53
unknown

Not on your lists

44447..44638
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_54
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

44694..45152
DNA (459bp) protein (153aa)
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
redoxin
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_55
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

45212..45763
DNA (552bp) protein (184aa)
Pyruvoyl-dependent arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01404}; Short=PvlArgDC {ECO:0000256|HAMAP-Rule:MF_01404};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01404};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Pyruvoyl-dependent arginine decarboxylase Tax=Thaumarchaeota archaeon N4 RepID=V6AT68_9ARCH
arginine decarboxylase
PLM3-1_170_b2_sep16_scaffold_529_56
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(45760..46893)
DNA (1134bp) protein (378aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
conserved exported protein of unknown function
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_57
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(47266..49035)
DNA (1770bp) protein (590aa)
pepF/M3 family oligoendopeptidase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
pepF/M3 family oligoendopeptidase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_529_58
unknown

Not on your lists

comp(50401..50991)
DNA (591bp) protein (197aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_59
unknown

Not on your lists

comp(51211..51501)
DNA (291bp) protein (97aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_529_60
unknown

Not on your lists

comp(51553..51735)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying items 31-60 of 89 in total

View Taxonomy