ggKbase home page

PLM3-1_170_b2_sep16_scaffold_594

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_594_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

377..1471
DNA (1095bp) protein (365aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_2

Not on your lists

comp(1474..2277)
DNA (804bp) protein (268aa)
Rhodanese domain protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KIE2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKK60847.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Sulfurtransferase
PLM3-1_170_b2_sep16_scaffold_594_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(2274..4109)
DNA (1836bp) protein (612aa)
sir; putative ferredoxin-dependent sulfite reductase (EC:1.8.7.1)
sulfite reductase ferredoxin bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

4263..5252
DNA (990bp) protein (330aa)
Putative myo-inositol-1-phosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGW3_NITGG
myo-inositol-1-phosphate synthase
Putative myo-inositol-1-phosphate synthase {ECO:0000313|EMBL:AFU59095.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_594_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5290..6108
DNA (819bp) protein (273aa)
putative ribose 1,5-bisphosphate isomerase (EC:5.3.1.29)
ribulose-1,5-biphosphate synthetase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

6134..6913
DNA (780bp) protein (260aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

6949..7914
DNA (966bp) protein (322aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
trxB; Thioredoxin reductase (EC:1.8.1.9)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(7916..8755)
DNA (840bp) protein (280aa)
Cysteine synthase {ECO:0000313|EMBL:CDI05416.1}; EC=2.5.1.47 {ECO:0000313|EMBL:CDI05416.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Cysteine synthase Tax=Thaumarchaeota archaeon N4 RepID=V6ARQ4_9ARCH
pyridoxal-5'-phosphate-dependent protein subunit beta
PLM3-1_170_b2_sep16_scaffold_594_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(8918..9115)
DNA (198bp) protein (66aa)
Putative SirA family protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICL2_NITGG
SirA family protein
Putative SirA family protein {ECO:0000313|EMBL:AFU59106.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_594_10
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9227..10147)
DNA (921bp) protein (307aa)
PHP domain protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A3D5_NITMS
phosphotransferase domain-containing protein
PHP domain protein {ECO:0000313|EMBL:ABX12564.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_594_11
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10190..10930)
DNA (741bp) protein (247aa)
F420-0 gamma-glutamyl ligase-related protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KIC6_9ARCH
F420-0 gamma-glutamyl ligase-related protein {ECO:0000313|EMBL:EGG42911.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
F420-dependent oxidoreductase
PLM3-1_170_b2_sep16_scaffold_594_12
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10972..11592)
DNA (621bp) protein (207aa)
Phosphoserine phosphatase SerB Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVX2_9ARCH
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:EGP93424.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
phosphoserine phosphatase SerB
PLM3-1_170_b2_sep16_scaffold_594_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

11727..12011
DNA (285bp) protein (95aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_14

Not on your lists


12054..13496
DNA (1443bp) protein (481aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_01_A07.;"
prolyl-tRNA synthetase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
prolyl-tRNA synthetase
PLM3-1_170_b2_sep16_scaffold_594_15

Not on your lists

13532..14179
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B860_9ARCH
Putative membrane SNARE associated-like protein {ECO:0000313|EMBL:AIF02854.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_15_E05.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_594_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(14176..14739)
DNA (564bp) protein (188aa)
DNA-3-methyladenine glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative 3-methyladenine DNA glycosylase (EC:3.2.2.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_17
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(14736..15314)
DNA (579bp) protein (193aa)
phage SPO1 DNA polymerase-like protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Phage SPO1 DNA polymerase-related protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_594_18

Not on your lists

comp(15315..16733)
DNA (1419bp) protein (473aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM19090.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidase U62 modulator of DNA gyrase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
peptidase U62 modulator of DNA gyrase
PLM3-1_170_b2_sep16_scaffold_594_19
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

16975..18780
DNA (1806bp) protein (602aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6ASX0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05816.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
PilT protein domain-containing protein
Displaying 19 items

View Taxonomy