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PLM3-1_170_b2_sep16_scaffold_596

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_596_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(3..815)
DNA (813bp) protein (271aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
cysS; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteinyl-tRNA synthetase Tax=Thaumarchaeota archaeon N4 RepID=V6ASZ2_9ARCH
PLM3-1_170_b2_sep16_scaffold_596_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(822..1610)
DNA (789bp) protein (263aa)
nadE; NAD+ synthetase (EC:6.3.1.5)
NAD+ synthetase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_3
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(1652..1834)
DNA (183bp) protein (61aa)
Rieske (2Fe-2S) domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6ATB2_9ARCH
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:CDI05760.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Rieske (2Fe-2S) domain-containing protein
PLM3-1_170_b2_sep16_scaffold_596_4
uncultured marine crenarchaeote KM3-47-D6, Nitrosopumilales, Thaumarchaeota, Archaea

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1913..3154
DNA (1242bp) protein (414aa)
Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|RuleBase:RU000548};; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote KM3-47-D6.;"
ahcY; Adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase Tax=uncultured marine crenarchaeote KM3-47-D6 RepID=B3V593_9ARCH
PLM3-1_170_b2_sep16_scaffold_596_5
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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3185..4834
DNA (1650bp) protein (550aa)
metG; Methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
Methionine--tRNA ligase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BF56_9ARCH
PLM3-1_170_b2_sep16_scaffold_596_6
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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4999..5997
DNA (999bp) protein (333aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Acetohydroxy-acid isomeroreductase Tax=Thaumarchaeota archaeon N4 RepID=V6ATA7_9ARCH
PLM3-1_170_b2_sep16_scaffold_596_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5998..6420)
DNA (423bp) protein (141aa)
cobalamin B12-binding domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
B12 binding domain protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_8
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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6498..7439
DNA (942bp) protein (314aa)
LAO/AO transport system ATPase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A2E0_NITMS
LAO/AO transport system ATPase
LAO/AO transport system ATPase {ECO:0000313|EMBL:ABX12851.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_596_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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7444..9015
DNA (1572bp) protein (524aa)
mut; methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
methylmalonyl-CoA mutase large subunit bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_10
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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9017..9415
DNA (399bp) protein (133aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Thaumarchaeota archaeon N4 RepID=V6ATI7_9ARCH
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CDI05748.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM3-1_170_b2_sep16_scaffold_596_11
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9418..9972)
DNA (555bp) protein (185aa)
XRE family transcriptional regulator Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BCX9_9ARCH
CBS domain protein {ECO:0000313|EMBL:EPA06685.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
XRE family transcriptional regulator
PLM3-1_170_b2_sep16_scaffold_596_12
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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10048..10671
DNA (624bp) protein (208aa)
Secreted protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KK95_9ARCH
Secreted protein {ECO:0000313|EMBL:EGG42262.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
secreted protein
PLM3-1_170_b2_sep16_scaffold_596_13
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(10678..13422)
DNA (2745bp) protein (915aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CX84_9ARCH
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EGP93886.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
PLM3-1_170_b2_sep16_scaffold_596_14

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comp(13394..14065)
DNA (672bp) protein (224aa)
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:KKL68591.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
triosephosphate isomerase
PLM3-1_170_b2_sep16_scaffold_596_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(14141..15367)
DNA (1227bp) protein (409aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_16
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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15513..16817
DNA (1305bp) protein (435aa)
elongation factor 1-alpha (EC:2.7.7.4)
Putative elongation factor 1-alpha Tax=Thaumarchaeota archaeon N4 RepID=V6ATN5_9ARCH
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
PLM3-1_170_b2_sep16_scaffold_596_17
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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16826..17134
DNA (309bp) protein (103aa)
30S ribosomal protein S10P Tax=Thaumarchaeota archaeon N4 RepID=V6AT24_9ARCH
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
rpsJ; ribosomal protein S10
PLM3-1_170_b2_sep16_scaffold_596_18
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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17174..17371
DNA (198bp) protein (66aa)
RNA polymerase Rbp10 Tax=Nitrosopumilaceae RepID=K0B7V6_9ARCH
RNA polymerase Rbp10
RNA polymerase Rbp10 {ECO:0000313|EMBL:AFS81035.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_596_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(17368..17574)
DNA (207bp) protein (69aa)
C2H2 Zn finger protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
C2H2 Zn finger protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_20

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comp(17571..17999)
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=uncultured marine crenarchaeote KM3-86-C1 RepID=B3V5Y5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFM19516.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-P11.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_596_21
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(18126..18236)
DNA (111bp) protein (37aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D2K6_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ65949.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
PLM3-1_170_b2_sep16_scaffold_596_22
uncultured marine crenarchaeote AD1000-56-E4, Nitrosopumilales, Thaumarchaeota, Archaea

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18334..18840
DNA (507bp) protein (169aa)
Rossmann fold nucleotide-binding protein-like protein Tax=uncultured marine crenarchaeote AD1000-56-E4 RepID=B3V5T9_9ARCH
Rossmann fold nucleotide-binding protein-like protein {ECO:0000313|EMBL:ACF09663.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote AD1000-56-E4.;"
TIGR00725 family protein
PLM3-1_170_b2_sep16_scaffold_596_23
unknown

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comp(18960..19241)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_596_24
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19241..19639)
DNA (399bp) protein (133aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83674.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
hypothetical protein bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
PLM3-1_170_b2_sep16_scaffold_596_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19814..20128
DNA (315bp) protein (105aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036AD1C8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83673.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_596_26
unknown

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comp(20071..20343)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_596_27

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comp(20576..21679)
DNA (1104bp) protein (368aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase Tax=uncultured archaeon W4-93a RepID=H9BWV8_9ARCH
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:AFD03280.1}; species="Archaea; environmental samples.;" source="uncultured archaeon W4-93a.;"
PLM3-1_170_b2_sep16_scaffold_596_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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21824..22483
DNA (660bp) protein (220aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_596_29
unknown

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22603..22884
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_596_30
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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22865..23083
DNA (219bp) protein (73aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY90226.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Geoglobus.;" source="Geoglobus acetivorans.;"
Displaying items 1-30 of 33 in total

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