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PLM3-1_170_b2_sep16_scaffold_886

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_886_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(26..343)
DNA (318bp) protein (106aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_886_2
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(707..1105)
DNA (399bp) protein (133aa)
Mov34/MPN/PAD-1 family protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BAM9_9ARCH
Mov34/MPN/PAD-1 family protein
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:AFS82544.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_886_3

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comp(1142..2413)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI000361B3C5
Exonuclease SbcC {ECO:0000313|EMBL:AIF24796.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_40_A08.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_886_4
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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2479..2787
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6ARV1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05461.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
conserved exported protein of unknown function
PLM3-1_170_b2_sep16_scaffold_886_5
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2929..3267)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUS4_9ARCH
putative RNA-binding protein, contains TRAM domain
Putative RNA-binding protein, contains TRAM domain {ECO:0000313|EMBL:AIF83749.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_886_6
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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3558..4472
DNA (915bp) protein (305aa)
Transcription initiation factor IIB Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUY1_9ARCH
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
transcription initiation factor TFIIB
PLM3-1_170_b2_sep16_scaffold_886_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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4732..6774
DNA (2043bp) protein (681aa)
ATPase AAA bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Cell division cycle protein 48 AF_1297-like protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_886_8
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6973..7272)
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Treponema denticola RepID=M2AN26_TREDN
Uncharacterized protein {ECO:0000313|EMBL:GAJ50982.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. masoucida NBRC 13784.;"
HNH nuclease
PLM3-1_170_b2_sep16_scaffold_886_9
unknown

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comp(7281..7457)
DNA (177bp) protein (59aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_886_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(8028..8279)
DNA (252bp) protein (84aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_886_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(8368..8670)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INL1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59564.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_886_12
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(8667..9110)
DNA (444bp) protein (148aa)
Regulatory protein Tax=Thermococcus onnurineus (strain NA1) RepID=B6YVX6_THEON
regulatory protein
Regulatory protein {ECO:0000313|EMBL:ACJ16299.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus onnurineus (strain NA1).;"
PLM3-1_170_b2_sep16_scaffold_886_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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9427..10152
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VPA9_POLNA
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b2_sep16_scaffold_886_trna_1
unknown

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comp(10312..10406)
DNA (95bp)
transferRNA Ser
PLM3-1_170_b2_sep16_scaffold_886_14
unknown

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10750..10932
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_886_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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10967..11992
DNA (1026bp) protein (342aa)
flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
flap endonuclease-1
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_886_16
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(12067..12504)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A168_NITMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX12354.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_886_17
Cenarchaeum symbiosum, Cenarchaeum, Cenarchaeales, Thaumarchaeota, Archaea

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comp(12545..13168)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A165_NITMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK78518.1}; species="Archaea; Thaumarchaeota; Cenarchaeales; Cenarchaeaceae; Cenarchaeum.;" source="Cenarchaeum symbiosum (strain A).;"
PLM3-1_170_b2_sep16_scaffold_886_18
unknown

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comp(13221..13502)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_886_19
Streptococcus sp. HSISM1, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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13600..15867
DNA (2268bp) protein (756aa)
Chaperone protein DnaK Tax=Streptococcus sp. HSISM1 RepID=T0V945_9STRE
Chaperone protein DnaK {ECO:0000313|EMBL:EQC75948.1}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. HSISM1.;"
hsa; streptococcal hemagglutinin
PLM3-1_170_b2_sep16_scaffold_886_20
unknown

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16011..16742
DNA (732bp) protein (244aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_886_21
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(16796..18406)
DNA (1611bp) protein (537aa)
Thymidylate synthase complementing protein ThyX Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A4A5_NITMS
Thymidylate synthase complementing protein ThyX
Thymidylate synthase complementing protein ThyX {ECO:0000313|EMBL:AJM92760.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
Displaying 22 items

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