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PLM3-1_170_b2_sep16_scaffold_1596

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1596_1

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comp(3..881)
DNA (879bp) protein (293aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL61643.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1596_2
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(1012..1335)
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KMT9_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EGG41381.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1596_3
uncultured crenarchaeote, Crenarchaeota, Archaea

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1488..2414
DNA (927bp) protein (309aa)
Transcription initiation factor IIB Tax=uncultured crenarchaeote RepID=Q701V6_9CREN
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
tfb1; transcription initiation factor IIB
PLM3-1_170_b2_sep16_scaffold_1596_4
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2454..3413)
DNA (960bp) protein (320aa)
Band 7 protein Tax=Methanoregula boonei (strain 6A8) RepID=A7I7I0_METB6
stomatin-like protein
Stomatin-like protein {ECO:0000313|EMBL:AIC15644.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1596_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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3667..4557
DNA (891bp) protein (297aa)
Putative transcription initiation factor TFIIB Tax=Thaumarchaeota archaeon N4 RepID=V6AUX0_9ARCH
Putative transcription initiation factor TFIIB {ECO:0000313|EMBL:CDI06350.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Transcription initiation factor IIB (TFIIB)
PLM3-1_170_b2_sep16_scaffold_1596_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5031..5177)
DNA (147bp) protein (49aa)
Uncharacterized protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1596_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5272..5946)
DNA (675bp) protein (225aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ66_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15305.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1596_8
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6068..6463
DNA (396bp) protein (132aa)
UPI0003AA519C related cluster Tax=unknown RepID=UPI0003AA519C
phosphate starvation protein
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subsp. niger.;"
PLM3-1_170_b2_sep16_scaffold_1596_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(7033..7440)
DNA (408bp) protein (136aa)
signal-transduction protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
signal-transduction protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1596_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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7819..8772
DNA (954bp) protein (318aa)
heat shock protein; K03799 heat shock protein HtpX [EC:3.4.24.-] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
heat shock protein HtpX (Zn-dependent) (EC:3.4.24.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1596_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8881..9504
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMV3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58274.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1596_12
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9504..10259
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ72_NITGG
membrane protein of unknown function DUF2182
Uncharacterized protein {ECO:0000313|EMBL:AIC15884.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_1596_13
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10309..10893
DNA (585bp) protein (195aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.;" source="Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303).;"
Peptide methionine sulfoxide reductase MsrA Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9W5_METEZ
PLM3-1_170_b2_sep16_scaffold_1596_14
R_Melainabacteria_34_12, Melainabacteria, Bacteria

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10898..11290
DNA (393bp) protein (131aa)
protein-methionine-S-oxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
PLM3-1_170_b2_sep16_scaffold_1596_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11369..11572
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFH3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60116.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_1596_16
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(11622..11900)
DNA (279bp) protein (93aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A3U7_NITMS
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABX13359.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b2_sep16_scaffold_1596_17
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

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12171..13628
DNA (1458bp) protein (486aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0M8_9ARCH
tetratricopeptide repeat protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AJA91969.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM3-1_170_b2_sep16_scaffold_1596_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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13936..14073
DNA (138bp) protein (46aa)
id=14427756 bin=bin2_Thaum tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_1596_19
unknown

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14070..14237
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying 19 items

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